RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 DYNC1I2Q13409 638 aaKnown RBP3.85□□□□□ -1.79
HMGB3-203ENST00000430118 DRP2Q13474 957 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 RBMS2Q15434 407 aaKnown RBP3.85□□□□□ -1.79
HMGB3-203ENST00000430118 USH1GQ495M9 461 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 Q4G0T1 1027 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 SLC39A12Q504Y0 691 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 LRRC73Q5JTD7 316 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 CELF3Q5SZQ8 465 aaKnown RBP3.85□□□□□ -1.79
HMGB3-203ENST00000430118 FNBP1LQ5T0N5 605 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 SYCE2Q6PIF2 218 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 TMEM182Q6ZP80 229 aaPredicted RBP3.85□□□□□ -1.79
HMGB3-203ENST00000430118 NUDT13Q86X67 352 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 COLGALT1Q8NBJ5 622 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 ACVR1CQ8NER5 493 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 VN1R2Q8NFZ6 395 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.85□□□□□ -1.79
HMGB3-203ENST00000430118 FAM216AQ8WUB2 273 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 CCDC107Q8WV48 283 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 RND1Q92730 232 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 BCL2L2Q92843 193 aaPredicted RBP3.85□□□□□ -1.79
HMGB3-203ENST00000430118 DHX58Q96C10 678 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 TXNDC15Q96J42 360 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 NAP1L3Q99457 506 aaPredicted RBP3.85□□□□□ -1.79
HMGB3-203ENST00000430118 SLC25A33Q9BSK2 321 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 TSGA10Q9BZW7 698 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 NACA2Q9H009 215 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 NAPBQ9H115 298 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 TNMDQ9H2S6 317 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 THAP9Q9H5L6 903 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 PDRG1Q9NUG6 133 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 TMEM161AQ9NX61 479 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 NPAP1Q9NZP6 1156 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 PYCARDQ9ULZ3 195 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 ZNF510Q9Y2H8 683 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 TMED5Q9Y3A6 229 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 MRPL11Q9Y3B7 192 aaKnown RBP3.85□□□□□ -1.79
HMGB3-203ENST00000430118 LCTP09848 1927 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 BAZ2AQ9UIF9 1905 aaKnown RBP3.85□□□□□ -1.79
HMGB3-203ENST00000430118 WDR87Q6ZQQ6 2873 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 KIAA1671Q9BY89 1806 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 CHD6Q8TD26 2715 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 PRSS51A0A1B0GVH4 220 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 FAM90A10PA6NDY2 464 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 OR5K3A6NET4 321 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 CCDC69A6NI79 296 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 OR6C75A6NL08 312 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 DUXAA6NLW8 204 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 RTCAO00442 366 aaKnown RBP3.84□□□□□ -1.79
HMGB3-203ENST00000430118 SELENOFO60613 162 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 RNASEH1O60930 286 aaKnown RBP3.84□□□□□ -1.79
HMGB3-203ENST00000430118 FCGR3BO75015 233 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 SERPINI2O75830 405 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 ADCY5O95622 1261 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 IGHDP01880 384 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 DCNP07585 359 aaKnown RBP3.84□□□□□ -1.79
HMGB3-203ENST00000430118 RETP07949 1114 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 INHBAP08476 426 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 DESP17661 470 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 TYMPP19971 482 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 TNFRSF1BP20333 461 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 S1PR1P21453 382 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 PTENP60484 403 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 SNAP25P60880 206 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 EEF1A1P68104 462 aaKnown RBP3.84□□□□□ -1.79
HMGB3-203ENST00000430118 PHEXP78562 749 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 SSBP2P81877 361 aaPredicted RBP3.84□□□□□ -1.79
HMGB3-203ENST00000430118 MRPS6P82932 125 aaKnown RBP3.84□□□□□ -1.79
HMGB3-203ENST00000430118 MAT1AQ00266 395 aaKnown RBP3.84□□□□□ -1.79
HMGB3-203ENST00000430118 PDE1BQ01064 536 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 CSTF1Q05048 431 aaKnown RBP3.84□□□□□ -1.79
HMGB3-203ENST00000430118 IFFO1Q0D2I5 559 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 TROAPQ12815 778 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 PTPN14Q15678 1187 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 NPTX1Q15818 432 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 TAZQ16635 292 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 HSDL1Q3SXM5 330 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 TDRD12Q587J7 1177 aaKnown RBP3.84□□□□□ -1.79
HMGB3-203ENST00000430118 TCTE1Q5JU00 501 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 EEF1A1P5Q5VTE0 462 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 ETFRF1Q6IPR1 90 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 WDR73Q6P4I2 378 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 KLC3Q6P597 504 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 SHC4Q6S5L8 630 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 TMEM270Q6UE05 265 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 METTL7BQ6UX53 244 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 CATSPER4Q7RTX7 472 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 RABEPKQ7Z6M1 372 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 CCDC65Q8IXS2 484 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 PEX5LQ8IYB4 626 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 HDDC3Q8N4P3 179 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 AMER3Q8N944 861 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 LPCAT1Q8NF37 534 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 RDM1Q8NG50 284 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 DENND1AQ8TEH3 1009 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 TMEM255BQ8WV15 326 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 SSMEM1Q8WWF3 244 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 SLC35B4Q969S0 331 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 RBM41Q96IZ5 413 aaKnown RBP3.84□□□□□ -1.79
HMGB3-203ENST00000430118 ANKRD27Q96NW4 1050 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 KLHL5Q96PQ7 755 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms