RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 LCTLQ6UWM7 567 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 TMPRSS9Q7Z410 1059 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 AQP12AQ8IXF9 295 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 SLC15A3Q8IY34 581 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 DPP10Q8N608 796 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 TMEM102Q8N9M5 508 aaPredicted RBP12.84□□□□□ -0.35
LIMS1-204ENST00000409441 OR2L3Q8NG85 312 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 WDR48Q8TAF3 677 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 MAGEB10Q96LZ2 347 aaPredicted RBP12.84□□□□□ -0.35
LIMS1-204ENST00000409441 PPM1MQ96MI6 270 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 DPYSL5Q9BPU6 564 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 HAUS8Q9BT25 410 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 Q9H521 79 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 COPS7BQ9H9Q2 264 aaPredicted RBP12.84□□□□□ -0.35
LIMS1-204ENST00000409441 DNAJC11Q9NVH1 559 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 ASIC5Q9NY37 505 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 KLHL3Q9UH77 587 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 PCDHA9Q9Y5H5 950 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 H0YJX3 145 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 KCNK5O95279 499 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 C9P02748 559 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 FTH1P19P0C7X4 201 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 JAK1P23458 1154 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 LSSP48449 732 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 CLCN2P51788 898 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 EEFSECP57772 596 aaKnown RBP12.84□□□□□ -0.35
LIMS1-204ENST00000409441 INSM1Q01101 510 aaPredicted RBP12.84□□□□□ -0.35
LIMS1-204ENST00000409441 TLR1Q15399 786 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 SLC5A12Q1EHB4 618 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 GGTA1PQ4G0N0 100 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 SNAP47Q5SQN1 464 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 KIAA1614Q5VZ46 1190 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 LCN8Q6JVE9 175 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 TRIM46Q7Z4K8 759 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 TRIM73Q86UV7 250 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 LILRA2Q8N149 483 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 OR4D9Q8NGE8 314 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 TMEM125Q96AQ2 219 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 CD180Q99467 661 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 MAP3K3Q99759 626 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 PKP2Q99959 881 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 C1orf50Q9BV19 199 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 SEMA6CQ9H3T2 930 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 ARMC1Q9NVT9 282 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 ACTR3BQ9P1U1 418 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 PDP2Q9P2J9 529 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 RAB26Q9ULW5 256 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 EIF3LQ9Y262 564 aaKnown RBP12.84□□□□□ -0.35
LIMS1-204ENST00000409441 CCL27Q9Y4X3 112 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 KCNE2Q9Y6J6 123 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 CEP250Q9BV73 2442 aa12.83□□□□□ -0.35
LIMS1-204ENST00000409441 DCDC2BA2VCK2 349 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 ASPDHA6ND91 283 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 A8MU76 341 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 DNAJA2O60884 412 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 DKK1O94907 266 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 CDH3P22223 829 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 CMPK1P30085 196 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 ABATP80404 500 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 ABRAXAS2Q15018 415 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 AP5B1Q2VPB7 878 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 CACHD1Q5VU97 1274 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 IL23RQ5VWK5 629 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 CYP20A1Q6UW02 462 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 DHRS13Q6UX07 377 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 C17orf64Q86WR6 236 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 DCBLD1Q8N8Z6 715 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 PROKR1Q8TCW9 393 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 USP7Q93009 1102 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 NEIL2Q969S2 332 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 TEX37Q96LM6 180 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 SLC39A3Q9BRY0 314 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 KLHL25Q9H0H3 589 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 IL1RL2Q9HB29 575 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 MRPS30Q9NP92 439 aaKnown RBP12.83□□□□□ -0.36
LIMS1-204ENST00000409441 C1GALT1Q9NS00 363 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 CMTM6Q9NX76 183 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 SH2B3Q9UQQ2 575 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 KLHL20Q9Y2M5 609 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 DYRK1BQ9Y463 629 aa12.83□□□□□ -0.36
LIMS1-204ENST00000409441 MN1Q10571 1320 aaPredicted RBP12.83□□□□□ -0.36
LIMS1-204ENST00000409441 UNC13CQ8NB66 2214 aa12.82□□□□□ -0.36
LIMS1-204ENST00000409441 PIEZO1Q92508 2521 aa12.82□□□□□ -0.36
LIMS1-204ENST00000409441 IGHV5-51A0A0C4DH38 117 aa12.82□□□□□ -0.36
LIMS1-204ENST00000409441 IGHV5-10-1A0A0J9YXX1 117 aa12.82□□□□□ -0.36
LIMS1-204ENST00000409441 SLC9B1P1A6NJY1 282 aa12.82□□□□□ -0.36
LIMS1-204ENST00000409441 D6RAR5 112 aa12.82□□□□□ -0.36
LIMS1-204ENST00000409441 H7BY64 318 aa12.82□□□□□ -0.36
LIMS1-204ENST00000409441 DENRO43583 198 aaKnown RBP12.82□□□□□ -0.36
LIMS1-204ENST00000409441 ULK1O75385 1050 aa12.82□□□□□ -0.36
LIMS1-204ENST00000409441 CCNDBP1O95273 360 aa12.82□□□□□ -0.36
LIMS1-204ENST00000409441 FKBP9O95302 570 aa12.82□□□□□ -0.36
LIMS1-204ENST00000409441 CLDN9O95484 217 aa12.82□□□□□ -0.36
LIMS1-204ENST00000409441 KRT6AP02538 564 aa12.82□□□□□ -0.36
LIMS1-204ENST00000409441 KRT6BP04259 564 aa12.82□□□□□ -0.36
LIMS1-204ENST00000409441 LYNP07948 512 aa12.82□□□□□ -0.36
LIMS1-204ENST00000409441 PVRP15151 417 aa12.82□□□□□ -0.36
LIMS1-204ENST00000409441 EPORP19235 508 aa12.82□□□□□ -0.36
LIMS1-204ENST00000409441 GRIA3P42263 894 aa12.82□□□□□ -0.36
LIMS1-204ENST00000409441 KRT6CP48668 564 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms