RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 A0A088AWK7 358 aa17.18■□□□□ 0.34
SDC1-203ENST00000403076 GNG14A0A1W2PPG7 69 aa17.18■□□□□ 0.34
SDC1-203ENST00000403076 ARHGAP10A1A4S6 786 aa17.18■□□□□ 0.34
SDC1-203ENST00000403076 NPIPB8E9PQR5 432 aa17.18■□□□□ 0.34
SDC1-203ENST00000403076 DKK1O94907 266 aa17.18■□□□□ 0.34
SDC1-203ENST00000403076 KLK1P06870 262 aa17.18■□□□□ 0.34
SDC1-203ENST00000403076 PRR35P0CG20 571 aa17.18■□□□□ 0.34
SDC1-203ENST00000403076 ALOX12P18054 663 aa17.18■□□□□ 0.34
SDC1-203ENST00000403076 ZNF10P21506 573 aaPredicted RBP17.18■□□□□ 0.34
SDC1-203ENST00000403076 BTN3A2P78410 334 aa17.18■□□□□ 0.34
SDC1-203ENST00000403076 RPS6KA2Q15349 733 aa17.18■□□□□ 0.34
SDC1-203ENST00000403076 IL23RQ5VWK5 629 aa17.18■□□□□ 0.34
SDC1-203ENST00000403076 TMEM198Q66K66 360 aa17.18■□□□□ 0.34
SDC1-203ENST00000403076 TMEM214Q6NUQ4 689 aaKnown RBP17.18■□□□□ 0.34
SDC1-203ENST00000403076 RAB11FIP2Q7L804 512 aa17.18■□□□□ 0.34
SDC1-203ENST00000403076 ALYREFQ86V81 257 aaKnown RBP17.18■□□□□ 0.34
SDC1-203ENST00000403076 NUDT13Q86X67 352 aa17.18■□□□□ 0.34
SDC1-203ENST00000403076 CACNA2D3Q8IZS8 1091 aa17.18■□□□□ 0.34
SDC1-203ENST00000403076 ANKS4BQ8N8V4 417 aa17.18■□□□□ 0.34
SDC1-203ENST00000403076 OR8K5Q8NH50 307 aa17.18■□□□□ 0.34
SDC1-203ENST00000403076 MARK4Q96L34 752 aa17.18■□□□□ 0.34
SDC1-203ENST00000403076 CATSPER2Q96P56 530 aa17.18■□□□□ 0.34
SDC1-203ENST00000403076 RTKNQ9BST9 563 aa17.18■□□□□ 0.34
SDC1-203ENST00000403076 NDC1Q9BTX1 674 aa17.18■□□□□ 0.34
SDC1-203ENST00000403076 SLC7A5P2Q9GIP4 190 aa17.18■□□□□ 0.34
SDC1-203ENST00000403076 ROGDIQ9GZN7 287 aa17.18■□□□□ 0.34
SDC1-203ENST00000403076 SLC22A7Q9Y694 548 aa17.18■□□□□ 0.34
SDC1-203ENST00000403076 POLR1CO15160 346 aaPredicted RBP17.17■□□□□ 0.34
SDC1-203ENST00000403076 GBAP04062 536 aa17.17■□□□□ 0.34
SDC1-203ENST00000403076 ANXA4P09525 319 aaPredicted RBP17.17■□□□□ 0.34
SDC1-203ENST00000403076 CCL4P13236 92 aa17.17■□□□□ 0.34
SDC1-203ENST00000403076 BSGP35613 385 aa17.17■□□□□ 0.34
SDC1-203ENST00000403076 ARFIP1P53367 373 aa17.17■□□□□ 0.34
SDC1-203ENST00000403076 MC2RQ01718 297 aa17.17■□□□□ 0.34
SDC1-203ENST00000403076 HERC3Q15034 1050 aa17.17■□□□□ 0.34
SDC1-203ENST00000403076 MUM1Q2TAK8 710 aa17.17■□□□□ 0.34
SDC1-203ENST00000403076 DEFB134Q4QY38 66 aa17.17■□□□□ 0.34
SDC1-203ENST00000403076 CCNYL2Q5T2Q4 361 aa17.17■□□□□ 0.34
SDC1-203ENST00000403076 GARNL3Q5VVW2 1013 aa17.17■□□□□ 0.34
SDC1-203ENST00000403076 METTL21CQ5VZV1 264 aa17.17■□□□□ 0.34
SDC1-203ENST00000403076 OGFOD2Q6N063 350 aa17.17■□□□□ 0.34
SDC1-203ENST00000403076 NOXRED1Q6NXP6 359 aa17.17■□□□□ 0.34
SDC1-203ENST00000403076 FOXR1Q6PIV2 292 aa17.17■□□□□ 0.34
SDC1-203ENST00000403076 UBE3DQ7Z6J8 389 aa17.17■□□□□ 0.34
SDC1-203ENST00000403076 BPHLQ86WA6 291 aaPredicted RBP17.17■□□□□ 0.34
SDC1-203ENST00000403076 PPP1R3BQ86XI6 285 aa17.17■□□□□ 0.34
SDC1-203ENST00000403076 TMEM126BQ8IUX1 230 aa17.17■□□□□ 0.34
SDC1-203ENST00000403076 LIN37Q96GY3 246 aaPredicted RBP17.17■□□□□ 0.34
SDC1-203ENST00000403076 CTRCQ99895 268 aa17.17■□□□□ 0.34
SDC1-203ENST00000403076 EBPLQ9BY08 206 aa17.17■□□□□ 0.34
SDC1-203ENST00000403076 ANKHQ9HCJ1 492 aa17.17■□□□□ 0.34
SDC1-203ENST00000403076 CUTCQ9NTM9 273 aa17.17■□□□□ 0.34
SDC1-203ENST00000403076 SLC39A1Q9NY26 324 aa17.17■□□□□ 0.34
SDC1-203ENST00000403076 NOP53Q9NZM5 478 aaKnown RBP17.17■□□□□ 0.34
SDC1-203ENST00000403076 NDOR1Q9UHB4 597 aa17.17■□□□□ 0.34
SDC1-203ENST00000403076 MRPS2Q9Y399 296 aaKnown RBP17.17■□□□□ 0.34
SDC1-203ENST00000403076 CEP250Q9BV73 2442 aa17.17■□□□□ 0.34
SDC1-203ENST00000403076 CCDC187A0A096LP49 1063 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 FITM1A5D6W6 292 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 C4orf51C9J302 202 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 ZNF749O43361 778 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 HYAL3O43820 417 aaPredicted RBP17.16■□□□□ 0.34
SDC1-203ENST00000403076 PCDH7O60245 1069 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 B3GALT4O96024 378 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 JMJD7P0C870 316 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 IL1RNP18510 177 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 ALAS2P22557 587 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 TIA1P31483 386 aaKnown RBP eCLIP17.16■□□□□ 0.342e-6■■■■□ 26.7
SDC1-203ENST00000403076 MAPK10P53779 464 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 ARSFP54793 590 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 IL11RAQ14626 422 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 KIAA0040Q15053 153 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 CYP20A1Q6UW02 462 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 PARP9Q8IXQ6 854 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 CDC26Q8NHZ8 85 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 APMAPQ9HDC9 416 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 PRDM7Q9NQW5 492 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 FBXO8Q9NRD0 319 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 MCM8Q9UJA3 840 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 ADAM29Q9UKF5 820 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 DLGAP4Q9Y2H0 992 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 SPTBP11277 2137 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 CNOT1A5YKK6 2376 aaKnown RBP17.16■□□□□ 0.34
SDC1-203ENST00000403076 DCDC2BA2VCK2 349 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 B4E171 279 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 EEDO75530 441 aaKnown RBP17.16■□□□□ 0.34
SDC1-203ENST00000403076 ALDOCP09972 364 aaKnown RBP17.16■□□□□ 0.34
SDC1-203ENST00000403076 SMIM10L1P0DMW3 83 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 PRPS2P11908 318 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 BCKDHAP12694 445 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 ATP5A1P25705 553 aaKnown RBP17.16■□□□□ 0.34
SDC1-203ENST00000403076 TSPAN7P41732 249 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 TSFMP43897 325 aaKnown RBP17.16■□□□□ 0.34
SDC1-203ENST00000403076 EMP3P54852 163 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 DIO3P55073 304 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 MTTPP55157 894 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 STX1BP61266 288 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 SKP1P63208 163 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 PRAMEF17Q5VTA0 474 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 TTLL10Q6ZVT0 673 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms