RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 PKP1Q13835 747 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 DHX34Q14147 1143 aaKnown RBP3.86□□□□□ -1.79
HMGB1-204ENST00000399489 KRT31Q15323 416 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 ZRSR1Q15695 479 aaKnown RBP3.86□□□□□ -1.79
HMGB1-204ENST00000399489 ETFDHQ16134 617 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 SSX2Q16385 188 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 PIP5KL1Q5T9C9 394 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 ATF7IP2Q5U623 682 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 LYSMD4Q5XG99 296 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 CARD17Q5XLA6 110 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 SIGIRRQ6IA17 410 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 LCN10Q6JVE6 187 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 SLC18B1Q6NT16 456 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 ZNF704Q6ZNC4 412 aaPredicted RBP3.86□□□□□ -1.79
HMGB1-204ENST00000399489 TMPRSS11FQ6ZWK6 438 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 TRMT11Q7Z4G4 463 aaKnown RBP3.86□□□□□ -1.79
HMGB1-204ENST00000399489 COMTD1Q86VU5 262 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 CCDC25Q86WR0 208 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 ECHDC2Q86YB7 292 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 UBE2J2Q8N2K1 259 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 ZNF397Q8NF99 534 aaPredicted RBP3.86□□□□□ -1.79
HMGB1-204ENST00000399489 U2AF1L4Q8WU68 220 aaKnown RBP3.86□□□□□ -1.79
HMGB1-204ENST00000399489 CHPT1Q8WUD6 406 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 ANKRD7Q92527 254 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 CDKL2Q92772 493 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 HAS2Q92819 552 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 GGHQ92820 318 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 P2RX5Q93086 422 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 MTMR9Q96QG7 549 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 RAB40CQ96S21 281 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 IDI2Q9BXS1 227 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 SNX25Q9H3E2 840 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 ZDHHC6Q9H6R6 413 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 ESRP2Q9H6T0 727 aaKnown RBP3.86□□□□□ -1.79
HMGB1-204ENST00000399489 PPP1R3EQ9H7J1 279 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 MVB12BQ9H7P6 319 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 COG4Q9H9E3 785 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 ACTR5Q9H9F9 607 aaPredicted RBP3.86□□□□□ -1.79
HMGB1-204ENST00000399489 MMP25Q9NPA2 562 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 CISD1Q9NZ45 108 aaKnown RBP3.86□□□□□ -1.79
HMGB1-204ENST00000399489 ONECUT1Q9UBC0 465 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 ANGPTL2Q9UKU9 493 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 FOXJ3Q9UPW0 622 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 B3GALT5Q9Y2C3 310 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 GRIP1Q9Y3R0 1128 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 KLK4Q9Y5K2 254 aa3.86□□□□□ -1.79
HMGB1-204ENST00000399489 HEMK1Q9Y5R4 338 aaPredicted RBP3.86□□□□□ -1.79
HMGB1-204ENST00000399489 DYNC1LI1Q9Y6G9 523 aaKnown RBP3.86□□□□□ -1.79
HMGB1-204ENST00000399489 POLA1P09884 1462 aaPredicted RBP3.85□□□□□ -1.79
HMGB1-204ENST00000399489 A0A096LPK6 155 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 NEMP2A6NFY4 417 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 PRSS46E5RG02 174 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 NME2P1O60361 137 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 LATS1O95835 1130 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 CAPN1P07384 714 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 CA3P07451 260 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 GCFC2P16383 781 aaKnown RBP3.85□□□□□ -1.79
HMGB1-204ENST00000399489 HNF1AP20823 631 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 HRH2P25021 359 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 CTNNA2P26232 953 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 ATP5C1P36542 298 aaKnown RBP3.85□□□□□ -1.79
HMGB1-204ENST00000399489 GRIA1P42261 906 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 TNFRSF4P43489 277 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 GPR12P47775 334 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 ALDH7A1P49419 539 aaKnown RBP3.85□□□□□ -1.79
HMGB1-204ENST00000399489 CEBPDP49716 269 aaPredicted RBP3.85□□□□□ -1.79
HMGB1-204ENST00000399489 COPB1P53618 953 aaKnown RBP3.85□□□□□ -1.79
HMGB1-204ENST00000399489 CRYBB1P53674 252 aaPredicted RBP3.85□□□□□ -1.79
HMGB1-204ENST00000399489 MTX1Q13505 466 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 KLF9Q13886 244 aaPredicted RBP3.85□□□□□ -1.79
HMGB1-204ENST00000399489 PCK2Q16822 640 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 GPAT3Q53EU6 434 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 IL23RQ5VWK5 629 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 ZDHHC20Q5W0Z9 365 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 ZNF770Q6IQ21 691 aaPredicted RBP3.85□□□□□ -1.79
HMGB1-204ENST00000399489 KIAA1161Q6NSJ0 714 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 ZNF534Q76KX8 674 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 LONP2Q86WA8 852 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 TMC8Q8IU68 726 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 COMMD1Q8N668 190 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 SAP25Q8TEE9 199 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 TSEN15Q8WW01 171 aaKnown RBP3.85□□□□□ -1.79
HMGB1-204ENST00000399489 EMG1Q92979 244 aaKnown RBP3.85□□□□□ -1.79
HMGB1-204ENST00000399489 MCHR2Q969V1 340 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 HMCESQ96FZ2 354 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 ART5Q96L15 291 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 ZNF48Q96MX3 618 aaPredicted RBP3.85□□□□□ -1.79
HMGB1-204ENST00000399489 MMS19Q96T76 1030 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 ALKBH7Q9BT30 221 aaPredicted RBP3.85□□□□□ -1.79
HMGB1-204ENST00000399489 TMEM43Q9BTV4 400 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 NTMT1Q9BV86 223 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 OSBPL10Q9BXB5 764 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 Q9N2K0 584 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 GAR1Q9NY12 217 aaKnown RBP3.85□□□□□ -1.79
HMGB1-204ENST00000399489 NARFQ9UHQ1 456 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 ACSL5Q9ULC5 683 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 PCDHA7Q9UN72 937 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 B9D1Q9UPM9 204 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 PRELID1Q9Y255 219 aa3.85□□□□□ -1.79
HMGB1-204ENST00000399489 NFE2L3Q9Y4A8 694 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms