RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 SH2B3Q9UQQ2 575 aa6.96□□□□□ -1.29
UPF2-203ENST00000397053 KIF21AQ7Z4S6 1674 aa6.96□□□□□ -1.29
UPF2-203ENST00000397053 ISPDA4D126 451 aa6.96□□□□□ -1.29
UPF2-203ENST00000397053 A6NL46 340 aa6.96□□□□□ -1.29
UPF2-203ENST00000397053 EFCAB9A8MZ26 197 aa6.96□□□□□ -1.29
UPF2-203ENST00000397053 NPHS1O60500 1241 aa6.96□□□□□ -1.29
UPF2-203ENST00000397053 HNRNPA1P09651 372 aaKnown RBP eCLIP6.96□□□□□ -1.29
UPF2-203ENST00000397053 ENGP17813 658 aa6.96□□□□□ -1.29
UPF2-203ENST00000397053 ACVRL1P37023 503 aa6.96□□□□□ -1.29
UPF2-203ENST00000397053 FBXO43Q4G163 708 aa6.96□□□□□ -1.29
UPF2-203ENST00000397053 ARSHQ5FYA8 562 aa6.96□□□□□ -1.29
UPF2-203ENST00000397053 FAM69BQ5VUD6 431 aa6.96□□□□□ -1.29
UPF2-203ENST00000397053 AADACL4Q5VUY2 407 aa6.96□□□□□ -1.29
UPF2-203ENST00000397053 CARD17Q5XLA6 110 aa6.96□□□□□ -1.29
UPF2-203ENST00000397053 ANKK1Q8NFD2 765 aa6.96□□□□□ -1.29
UPF2-203ENST00000397053 NANOS1Q8WY41 292 aaKnown RBP6.96□□□□□ -1.29
UPF2-203ENST00000397053 HPS1Q92902 700 aa6.96□□□□□ -1.29
UPF2-203ENST00000397053 PGAM5Q96HS1 289 aa6.96□□□□□ -1.29
UPF2-203ENST00000397053 KCTD7Q96MP8 289 aa6.96□□□□□ -1.29
UPF2-203ENST00000397053 DCBLD2Q96PD2 775 aa6.96□□□□□ -1.29
UPF2-203ENST00000397053 HAO2Q9NYQ3 351 aa6.96□□□□□ -1.29
UPF2-203ENST00000397053 DNAJB9Q9UBS3 223 aa6.96□□□□□ -1.29
UPF2-203ENST00000397053 RPL26L1Q9UNX3 145 aaKnown RBP6.96□□□□□ -1.29
UPF2-203ENST00000397053 ICKQ9UPZ9 632 aa6.96□□□□□ -1.29
UPF2-203ENST00000397053 COL5A2P05997 1499 aaPredicted RBP6.96□□□□□ -1.3
UPF2-203ENST00000397053 OR6C74A6NCV1 312 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 GGT3PA6NGU5 568 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 HEPACAM2A8MVW5 462 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 CD3GP09693 182 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 PABPC4LP0CB38 370 aaKnown RBP6.96□□□□□ -1.3
UPF2-203ENST00000397053 ADORA3P0DMS8 318 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 RAP2AP10114 183 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 EPCAMP16422 314 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 GRIA2P42262 883 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 CDH11P55287 796 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 DLX2Q07687 328 aaPredicted RBP6.96□□□□□ -1.3
UPF2-203ENST00000397053 NNATQ16517 81 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 ATAD3CQ5T2N8 411 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 KIAA0319Q5VV43 1072 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 SYPL2Q5VXT5 272 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 LPCAT4Q643R3 524 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 DCP2Q8IU60 420 aaKnown RBP6.96□□□□□ -1.3
UPF2-203ENST00000397053 ARHGAP12Q8IWW6 846 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 SPAG16Q8N0X2 631 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 OR14L1PQ8NHC6 308 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 ZNF296Q8WUU4 475 aaPredicted RBP6.96□□□□□ -1.3
UPF2-203ENST00000397053 FCGR1BQ92637 280 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 KCNN1Q92952 543 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 NUDT15Q9NV35 164 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 TMEM184CQ9NVA4 438 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 STOX2Q9P2F5 926 aaPredicted RBP6.96□□□□□ -1.3
UPF2-203ENST00000397053 EPHA6Q9UF33 1036 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 PLAGL1Q9UM63 463 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 DLGAP4Q9Y2H0 992 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 H3BQ06 376 aaPredicted RBP6.96□□□□□ -1.3
UPF2-203ENST00000397053 TLR4O00206 839 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 TSPAN6O43657 245 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 HBQ1P09105 142 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 GSTT2P0CG29 244 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 FMO3P31513 532 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 GSTM4Q03013 218 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 TMEM115Q12893 351 aaPredicted RBP6.96□□□□□ -1.3
UPF2-203ENST00000397053 DEFB134Q4QY38 66 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 FOXR2Q6PJQ5 311 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 USP43Q70EL4 1123 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 MON1BQ7L1V2 547 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 MFSD8Q8NHS3 518 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 POC1BQ8TC44 478 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 CASTOR1Q8WTX7 329 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 IGSF21Q96ID5 467 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 MCHR1Q99705 422 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 G6PC3Q9BUM1 346 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 ZNF701Q9NV72 531 aaPredicted RBP6.96□□□□□ -1.3
UPF2-203ENST00000397053 SCP2D1Q9UJQ7 156 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 ATRNL1Q5VV63 1379 aa6.96□□□□□ -1.3
UPF2-203ENST00000397053 A8MVJ9 347 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 ZBTB22O15209 634 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 RNGTTO60942 597 aaKnown RBP6.95□□□□□ -1.3
UPF2-203ENST00000397053 IFNA2P01563 188 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 GBAP04062 536 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 CSF2P04141 144 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 HLA-DQB2P05538 268 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 CBSLP0DN79 551 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 CBSP35520 551 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 EEFSECP57772 596 aaKnown RBP6.95□□□□□ -1.3
UPF2-203ENST00000397053 ARG2P78540 354 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 FBXO46Q6PJ61 603 aaPredicted RBP6.95□□□□□ -1.3
UPF2-203ENST00000397053 C6orf120Q7Z4R8 191 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 RELL1Q8IUW5 271 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 TOMM5Q8N4H5 51 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 ZNF781Q8N8C0 355 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 TXNDC5Q8NBS9 432 aaKnown RBP6.95□□□□□ -1.3
UPF2-203ENST00000397053 GALNT11Q8NCW6 608 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 TOR1AIP2Q8NFQ8 470 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 OR5K1Q8NHB7 308 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 ASB15Q8WXK1 588 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 C7orf26Q96N11 449 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 FUZQ9BT04 418 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 LRRC3Q9BY71 257 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 RNF39Q9H2S5 420 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms