RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 DIRAS1O95057 198 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 CHRM1P11229 460 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 RPL17P18621 184 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 PRKACGP22612 351 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 VAMP2P63027 116 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 DSG2Q14126 1118 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 GPR68Q15743 365 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 PTCHD3Q3KNS1 767 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 ABCA11PQ4W5N1 156 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 MEDAGQ5VYS4 303 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 SETD6Q8TBK2 473 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 PLEKHO2Q8TD55 490 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 DEFB118Q96PH6 123 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 HIST1H2AAQ96QV6 131 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 ZNF382Q96SR6 550 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 RANBP3Q9H6Z4 567 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 SDHDO14521 159 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 ERI3O43414 337 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 IFNA21P01568 189 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 ZBTB48P10074 688 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 KCNE1P15382 129 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 ELNP15502 786 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 FUT4P22083 530 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 GGT5P36269 586 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 ACVRL1P37023 503 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 KCNC4Q03721 635 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 KCNAB2Q13303 367 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 PON3Q15166 354 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 GTF2IRD2BQ6EKJ0 949 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 DNM1P34Q6PK57 102 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 GTF2IRD2Q86UP8 949 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 THRSPQ92748 146 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 TRMT61BQ9BVS5 477 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 TSSK6Q9BXA6 273 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 B3GNT4Q9C0J1 378 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 ADAMTS10Q9H324 1103 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 FBRSL1Q9HCM7 1045 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 SCML2Q9UQR0 700 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 A8MV72 311 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 TPPPO94811 219 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 ZNF30P17039 623 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 SEMG2Q02383 582 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 LRRC73Q5JTD7 316 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 ATG9BQ674R7 924 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 SLC36A4Q6YBV0 504 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 TPRG1Q6ZUI0 275 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 SSX9Q7RTT3 188 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 TMCO2Q7Z6W1 182 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 PLD6Q8N2A8 252 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 PNLDC1Q8NA58 520 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 ZNF527Q8NB42 609 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 PROKR2Q8NFJ6 384 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 MFSD8Q8NHS3 518 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 MUS81Q96NY9 551 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 OR5B12Q96R08 314 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 WACQ9BTA9 647 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 ABCG4Q9H172 646 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 HCN2Q9UL51 889 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 ZNF670-ZNF695F2Z2N8 137 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 SLC31A1O15431 190 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 MATN1P21941 496 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 CCKBRP32239 447 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 BMP8BP34820 402 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 RAB5CP51148 216 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 SLC3A1Q07837 685 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 RAB39AQ14964 217 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 KLHL26Q53HC5 615 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 NANOGP8Q6NSW7 305 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 ABHD13Q7L211 337 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 ZNF367Q7RTV3 350 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 BMP8AQ7Z5Y6 402 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 KREMEN2Q8NCW0 462 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 ZNF384Q8TF68 577 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 PEBP4Q96S96 227 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 CD180Q99467 661 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 NSUN3Q9H649 340 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 NANOGQ9H9S0 305 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 ENAMQ9NRM1 1142 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 CACNG4Q9UBN1 327 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 PCDHGB2Q9Y5G2 931 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 A0A0G2JLL6 359 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 PSMD9O00233 223 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 ZNF208O43345 1280 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 CRTAPO75718 401 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 RASAL1O95294 804 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 OAS1P00973 400 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 HTR1EP28566 365 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 VIPR1P32241 457 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 HOXD13P35453 343 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 C6orf136Q5SQH8 315 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 C6orf141Q5SZD1 244 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 PRRT2Q7Z6L0 340 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 METTL25Q8N6Q8 603 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 ITPKCQ96DU7 683 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 ADAD1Q96M93 576 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 OR2M4Q96R27 311 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 KCNA7Q96RP8 456 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 EPYCQ99645 322 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 CD244Q9BZW8 370 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 WDR26Q9H7D7 661 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms