RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 UCK1Q9HA47 277 aa17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 ATAD3AQ9NVI7 634 aa17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 SPHK1Q9NYA1 384 aa17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 UBAP1Q9NZ09 502 aa17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 ANAPC2Q9UJX6 822 aa17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 ADAM29Q9UKF5 820 aa17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 EML5Q05BV3 1969 aa17.4■□□□□ 0.38
CCDC88C-203ENST00000389856 PRAMEF33A0A0G2JMD5 474 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 TCRBV5S2A0A599 114 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 GSAPA4D1B5 854 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 B4DGG1 531 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 AQP9O43315 295 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 ERN1O75460 977 aaKnown RBP17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 TIPRLO75663 272 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 CLPTM1O96005 669 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 ANXA6P08133 673 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 SMIM18P0DKX4 95 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 COX7A2P14406 83 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 FNTBP49356 437 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 HNRNPFP52597 415 aaKnown RBP17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 SPANXN4Q5MJ08 99 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 TMTC4Q5T4D3 741 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 C6orf52Q5T4I8 152 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 ANXA8L1Q5VT79 327 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 ADNP2Q6IQ32 1131 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 ZNF425Q6IV72 752 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 DLEU7Q6UYE1 221 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 RIMKLAQ8IXN7 391 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 KRTCAP2Q8N6L1 136 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 DNAJB14Q8TBM8 379 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 MTERF3Q96E29 417 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 THAP11Q96EK4 314 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 CNBD2Q96M20 576 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 CCDC115Q96NT0 180 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 CGREF1Q99674 301 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 ANKRD60Q9BZ19 345 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 SLC6A20Q9NP91 592 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 FAM120CQ9NX05 1096 aaKnown RBP17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 ACTR10Q9NZ32 417 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 SLCO1B1Q9Y6L6 691 aa17.39■□□□□ 0.38
CCDC88C-203ENST00000389856 A0A1B0GTW7 788 aa17.39■□□□□ 0.37
CCDC88C-203ENST00000389856 OR6C74A6NCV1 312 aa17.39■□□□□ 0.37
CCDC88C-203ENST00000389856 LMO7DNF2Z398 122 aa17.39■□□□□ 0.37
CCDC88C-203ENST00000389856 BTN3A3O00478 584 aa17.39■□□□□ 0.37
CCDC88C-203ENST00000389856 TACR1P25103 407 aa17.39■□□□□ 0.37
CCDC88C-203ENST00000389856 PEBP1P30086 187 aaKnown RBP17.39■□□□□ 0.37
CCDC88C-203ENST00000389856 DGKQP52824 942 aa17.39■□□□□ 0.37
CCDC88C-203ENST00000389856 RELAQ04206 551 aa17.39■□□□□ 0.37
CCDC88C-203ENST00000389856 PGS1Q32NB8 556 aa17.39■□□□□ 0.37
CCDC88C-203ENST00000389856 SLC2A7Q6PXP3 512 aa17.39■□□□□ 0.37
CCDC88C-203ENST00000389856 CARM1Q86X55 608 aa17.39■□□□□ 0.37
CCDC88C-203ENST00000389856 NUDT13Q86X67 352 aa17.39■□□□□ 0.37
CCDC88C-203ENST00000389856 TMEM132CQ8N3T6 1108 aa17.39■□□□□ 0.37
CCDC88C-203ENST00000389856 ANKRD53Q8N9V6 530 aa17.39■□□□□ 0.37
CCDC88C-203ENST00000389856 MFSD9Q8NBP5 474 aa17.39■□□□□ 0.37
CCDC88C-203ENST00000389856 OR10G6Q8NH81 332 aa17.39■□□□□ 0.37
CCDC88C-203ENST00000389856 CDC26Q8NHZ8 85 aa17.39■□□□□ 0.37
CCDC88C-203ENST00000389856 NELL1Q92832 810 aa17.39■□□□□ 0.37
CCDC88C-203ENST00000389856 TMEM74Q96NL1 305 aa17.39■□□□□ 0.37
CCDC88C-203ENST00000389856 TWSG1Q9GZX9 223 aa17.39■□□□□ 0.37
CCDC88C-203ENST00000389856 KCNH6Q9H252 994 aa17.39■□□□□ 0.37
CCDC88C-203ENST00000389856 SEMA6AQ9H2E6 1030 aa17.39■□□□□ 0.37
CCDC88C-203ENST00000389856 MYNNQ9NPC7 610 aa17.39■□□□□ 0.37
CCDC88C-203ENST00000389856 CD320Q9NPF0 282 aa17.39■□□□□ 0.37
CCDC88C-203ENST00000389856 PNPLA3Q9NST1 481 aa17.39■□□□□ 0.37
CCDC88C-203ENST00000389856 AURKCQ9UQB9 309 aa17.39■□□□□ 0.37
CCDC88C-203ENST00000389856 AP1M2Q9Y6Q5 423 aa17.39■□□□□ 0.37
CCDC88C-203ENST00000389856 FEZF1A0PJY2 475 aa17.38■□□□□ 0.37
CCDC88C-203ENST00000389856 SCAMP2O15127 329 aaKnown RBP17.38■□□□□ 0.37
CCDC88C-203ENST00000389856 CAPN5O15484 640 aaPredicted RBP17.38■□□□□ 0.37
CCDC88C-203ENST00000389856 NDUFS4O43181 175 aa17.38■□□□□ 0.37
CCDC88C-203ENST00000389856 SH3BGRLO75368 114 aa17.38■□□□□ 0.37
CCDC88C-203ENST00000389856 GMNNO75496 209 aa17.38■□□□□ 0.37
CCDC88C-203ENST00000389856 CELA2BP08218 269 aaPredicted RBP17.38■□□□□ 0.37
CCDC88C-203ENST00000389856 UGT2B7P16662 529 aa17.38■□□□□ 0.37
CCDC88C-203ENST00000389856 FASLGP48023 281 aa17.38■□□□□ 0.37
CCDC88C-203ENST00000389856 CYP4F2P78329 520 aa17.38■□□□□ 0.37
CCDC88C-203ENST00000389856 RAE1P78406 368 aaKnown RBP17.38■□□□□ 0.37
CCDC88C-203ENST00000389856 SIM2Q14190 667 aaPredicted RBP17.38■□□□□ 0.37
CCDC88C-203ENST00000389856 CYP51A1Q16850 503 aa17.38■□□□□ 0.37
CCDC88C-203ENST00000389856 CPTPQ5TA50 214 aa17.38■□□□□ 0.37
CCDC88C-203ENST00000389856 ARMCX6Q7L4S7 300 aa17.38■□□□□ 0.37
CCDC88C-203ENST00000389856 VN1R5Q7Z5H4 357 aa17.38■□□□□ 0.37
CCDC88C-203ENST00000389856 SPRED1Q7Z699 444 aa17.38■□□□□ 0.37
CCDC88C-203ENST00000389856 AMIGO2Q86SJ2 522 aa17.38■□□□□ 0.37
CCDC88C-203ENST00000389856 NATD1Q8N6N6 113 aa17.38■□□□□ 0.37
CCDC88C-203ENST00000389856 OR8J2Q8NGG1 315 aa17.38■□□□□ 0.37
CCDC88C-203ENST00000389856 OR52E4Q8NGH9 312 aa17.38■□□□□ 0.37
CCDC88C-203ENST00000389856 GAB3Q8WWW8 586 aa17.38■□□□□ 0.37
CCDC88C-203ENST00000389856 JPH3Q8WXH2 748 aaPredicted RBP17.38■□□□□ 0.37
CCDC88C-203ENST00000389856 NRTNQ99748 197 aa17.38■□□□□ 0.37
CCDC88C-203ENST00000389856 EGFL7Q9UHF1 273 aa17.38■□□□□ 0.37
CCDC88C-203ENST00000389856 MAN2B2Q9Y2E5 1009 aa17.38■□□□□ 0.37
CCDC88C-203ENST00000389856 COMMD3-BMI1R4GMX3 469 aa17.38■□□□□ 0.37
CCDC88C-203ENST00000389856 IGKV1-8A0A0C4DH67 115 aa17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 C7orf72A4D263 438 aa17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 TNFSF14O43557 240 aa17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 LRATO95237 230 aa17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 SERPIND1P05546 499 aa17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 POLR2CP19387 275 aaPredicted RBP17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms