RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 NRSN2Q9GZP1 204 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 VCXQ9H320 206 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 ACTL8Q9H568 366 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 ACTR8Q9H981 624 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 INTS7Q9NVH2 962 aaKnown RBP9.76□□□□□ -0.85
VPS53-202ENST00000389040 POMT2Q9UKY4 750 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 ZNF490Q9ULM2 529 aaPredicted RBP9.76□□□□□ -0.85
VPS53-202ENST00000389040 EIF3LQ9Y262 564 aaKnown RBP9.76□□□□□ -0.85
VPS53-202ENST00000389040 PRAMEF33A0A0G2JMD5 474 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 IGHV5-10-1A0A0J9YXX1 117 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 A6NHS1 94 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 ANKRD28O15084 1053 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 CCNDBP1O95273 360 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 SLC16A8O95907 504 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 NPPAP01160 153 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 UBTFL6P0CB48 400 aaPredicted RBP9.76□□□□□ -0.85
VPS53-202ENST00000389040 TYRP1P17643 537 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 EPORP19235 508 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 GRIA3P42263 894 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 SLC6A12P48065 614 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 PPM1FP49593 454 aaPredicted RBP9.76□□□□□ -0.85
VPS53-202ENST00000389040 PNLIPRP1P54315 467 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 YBX1P67809 324 aaKnown RBP9.76□□□□□ -0.85
VPS53-202ENST00000389040 ABATP80404 500 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 CFHR1Q03591 330 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 RELAQ04206 551 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 MAD2L1Q13257 205 aaPredicted RBP9.76□□□□□ -0.85
VPS53-202ENST00000389040 MED21Q13503 144 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 CCDC157Q569K6 752 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 EEF1AKMT2Q5JPI9 291 aaKnown RBP9.76□□□□□ -0.85
VPS53-202ENST00000389040 IRAK1BP1Q5VVH5 260 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 NKAIN2Q5VXU1 208 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 ZNF761Q86XN6 746 aaPredicted RBP9.76□□□□□ -0.85
VPS53-202ENST00000389040 DPP10Q8N608 796 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 LMNTD1Q8N9Z9 388 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 AGBL5Q8NDL9 886 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 DNAJB14Q8TBM8 379 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 KLHL6Q8WZ60 621 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 USP7Q93009 1102 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 FBXL8Q96CD0 374 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 PKP4Q99569 1192 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 NUDT22Q9BRQ3 303 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 EFHD1Q9BUP0 239 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 ALG2Q9H553 416 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 ZNF768Q9H5H4 540 aaKnown RBP9.76□□□□□ -0.85
VPS53-202ENST00000389040 CXorf56Q9H5V9 222 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 YY1AP1Q9H869 796 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 FARSBQ9NSD9 589 aaKnown RBP9.76□□□□□ -0.85
VPS53-202ENST00000389040 ACTR10Q9NZ32 417 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 ANKMY1Q9P2S6 941 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 WASF3Q9UPY6 502 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 PCDHB11Q9Y5F2 797 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 PCDHGA8Q9Y5G5 932 aa9.76□□□□□ -0.85
VPS53-202ENST00000389040 TDRD6O60522 2096 aaKnown RBP9.75□□□□□ -0.85
VPS53-202ENST00000389040 CCDC187A0A096LP49 1063 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 C15orf38-AP3S2A0A0A6YYH1 394 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 AQP12BA6NM10 295 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 BTN3A3O00478 584 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 GPR37O15354 613 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 CSO75390 466 aaKnown RBP9.75□□□□□ -0.85
VPS53-202ENST00000389040 ZBTB11O95625 1053 aaPredicted RBP9.75□□□□□ -0.85
VPS53-202ENST00000389040 KRT6AP02538 564 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 KRT6BP04259 564 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 LYNP07948 512 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 HOXB3P14651 431 aaPredicted RBP9.75□□□□□ -0.85
VPS53-202ENST00000389040 CSF2RBP32927 897 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 CSTF2P33240 577 aaKnown RBP eCLIP9.75□□□□□ -0.85
VPS53-202ENST00000389040 KRT6CP48668 564 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 HSD11B2P80365 405 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 HMGCS1Q01581 520 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 TAP2Q03519 686 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 FOLH1Q04609 750 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 TARDBPQ13148 414 aaKnown RBP eCLIP9.75□□□□□ -0.85
VPS53-202ENST00000389040 IMPG1Q17R60 797 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 ZXDCQ2QGD7 858 aaPredicted RBP9.75□□□□□ -0.85
VPS53-202ENST00000389040 GGTA1PQ4G0N0 100 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 SGO1Q5FBB7 561 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 RABL3Q5HYI8 236 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 LCN8Q6JVE9 175 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 SLC2A7Q6PXP3 512 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 SPESP1Q6UW49 350 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 ZNF574Q6ZN55 896 aaPredicted RBP9.75□□□□□ -0.85
VPS53-202ENST00000389040 ARPINQ7Z6K5 226 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 AQP12AQ8IXF9 295 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 WDR36Q8NI36 951 aaKnown RBP9.75□□□□□ -0.85
VPS53-202ENST00000389040 ZNF480Q8WV37 535 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 LRTOMTQ8WZ04 291 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 RSC1A1Q92681 617 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 MYCBPQ99417 103 aaPredicted RBP9.75□□□□□ -0.85
VPS53-202ENST00000389040 ZBTB18Q99592 522 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 TRIM8Q9BZR9 551 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 MUC13Q9H3R2 512 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 SEMA6CQ9H3T2 930 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 LRTM1Q9HBL6 345 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 SLAMF8Q9P0V8 285 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 ACTR3BQ9P1U1 418 aa9.75□□□□□ -0.85
VPS53-202ENST00000389040 GSAPA4D1B5 854 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 DPPA5A6NC42 116 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 B4E171 279 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 ARPC2O15144 300 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms