RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 BBS2Q9BXC9 721 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 ATG10Q9H0Y0 220 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 SPATA6Q9NWH7 488 aaPredicted RBP20.31■□□□□ 0.84
UPF3A-202ENST00000375299 CLN6Q9NWW5 311 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 OGDHLQ9ULD0 1010 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 TNFRSF10AO00220 468 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 MPZL2O60487 215 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 RPS5P46782 204 aaKnown RBP20.3■□□□□ 0.84
UPF3A-202ENST00000375299 DDX39BQ13838 428 aaKnown RBP20.3■□□□□ 0.84
UPF3A-202ENST00000375299 ZNF79Q15937 498 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 TSPAN33Q86UF1 283 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 SLC44A2Q8IWA5 706 aaPredicted RBP20.3■□□□□ 0.84
UPF3A-202ENST00000375299 GTPBP3Q969Y2 492 aaKnown RBP20.3■□□□□ 0.84
UPF3A-202ENST00000375299 MTERF1Q99551 399 aaKnown RBP20.3■□□□□ 0.84
UPF3A-202ENST00000375299 GDF15Q99988 308 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 P2RY13Q9BPV8 354 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 HHATLQ9HCP6 504 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 OR51B4Q9Y5P0 310 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 MAU2Q9Y6X3 613 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.3■□□□□ 0.84
UPF3A-202ENST00000375299 J3KTA2 159 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 ALX3O95076 343 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 SCG5P05408 212 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 MPC1LP0DKB6 136 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 IL7P13232 177 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 PRKCAP17252 672 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 CYP2A7P20853 494 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 CHMP24386 653 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 CSKP41240 450 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 CRATP43155 626 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 PFN3P60673 137 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 CHRNEQ04844 493 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 SLAMF1Q13291 335 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 RGMBQ6NW40 437 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 TRAF7Q6Q0C0 670 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 ANGPTL8Q6UXH0 198 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 PTCHD4Q6ZW05 846 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 CAMKMTQ7Z624 323 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 VRK3Q8IV63 474 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 OR4A15Q8NGL6 344 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 C2orf15Q8WU43 125 aaKnown RBP20.3■□□□□ 0.84
UPF3A-202ENST00000375299 WDFY2Q96P53 400 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 TTYH2Q9BSA4 534 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 SRRQ9GZT4 340 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 SLA2Q9H6Q3 261 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 PAQR5Q9NXK6 330 aaPredicted RBP20.3■□□□□ 0.84
UPF3A-202ENST00000375299 FTSJ1Q9UET6 329 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 ENOPH1Q9UHY7 261 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 HCN4Q9Y3Q4 1203 aa20.3■□□□□ 0.84
UPF3A-202ENST00000375299 ZAR1LA6NP61 321 aa20.29■□□□□ 0.84
UPF3A-202ENST00000375299 H3BM21 787 aa20.29■□□□□ 0.84
UPF3A-202ENST00000375299 PCDH17O14917 1159 aa20.29■□□□□ 0.84
UPF3A-202ENST00000375299 OR56A5P0C7T3 313 aa20.29■□□□□ 0.84
UPF3A-202ENST00000375299 PIPP12273 146 aaPredicted RBP20.29■□□□□ 0.84
UPF3A-202ENST00000375299 AZGP1P25311 298 aaKnown RBP20.29■□□□□ 0.84
UPF3A-202ENST00000375299 ASMTP46597 345 aa20.29■□□□□ 0.84
UPF3A-202ENST00000375299 C11orf24Q96F05 449 aaPredicted RBP20.29■□□□□ 0.84
UPF3A-202ENST00000375299 RNF170Q96K19 258 aa20.29■□□□□ 0.84
UPF3A-202ENST00000375299 TCF25Q9BQ70 676 aa20.29■□□□□ 0.84
UPF3A-202ENST00000375299 PLSCR3Q9NRY6 295 aa20.29■□□□□ 0.84
UPF3A-202ENST00000375299 UGDHO60701 494 aa20.29■□□□□ 0.84
UPF3A-202ENST00000375299 ETFAP13804 333 aa20.29■□□□□ 0.84
UPF3A-202ENST00000375299 IDSP22304 550 aa20.29■□□□□ 0.84
UPF3A-202ENST00000375299 CBLP22681 906 aa20.29■□□□□ 0.84
UPF3A-202ENST00000375299 CST5P28325 142 aaPredicted RBP20.29■□□□□ 0.84
UPF3A-202ENST00000375299 LIMS1P48059 325 aa20.29■□□□□ 0.84
UPF3A-202ENST00000375299 RORCP51449 518 aa20.29■□□□□ 0.84
UPF3A-202ENST00000375299 PSPHP78330 225 aa20.29■□□□□ 0.84
UPF3A-202ENST00000375299 RAE1P78406 368 aaKnown RBP20.29■□□□□ 0.84
UPF3A-202ENST00000375299 RHAGQ02094 409 aa20.29■□□□□ 0.84
UPF3A-202ENST00000375299 SP140Q13342 867 aa20.29■□□□□ 0.84
UPF3A-202ENST00000375299 RTP2Q5QGT7 225 aa20.29■□□□□ 0.84
UPF3A-202ENST00000375299 COX20Q5RI15 118 aa20.29■□□□□ 0.84
UPF3A-202ENST00000375299 LAX1Q8IWV1 398 aa20.29■□□□□ 0.84
UPF3A-202ENST00000375299 ACER3Q9NUN7 267 aa20.29■□□□□ 0.84
UPF3A-202ENST00000375299 A0A1W2PQ09 198 aa20.28■□□□□ 0.84
UPF3A-202ENST00000375299 SLC35F4A4IF30 521 aa20.28■□□□□ 0.84
UPF3A-202ENST00000375299 SMAD6O43541 496 aaKnown RBP20.28■□□□□ 0.84
UPF3A-202ENST00000375299 MVDP53602 400 aa20.28■□□□□ 0.84
UPF3A-202ENST00000375299 CASP9P55211 416 aa20.28■□□□□ 0.84
UPF3A-202ENST00000375299 ARPC4P59998 168 aa20.28■□□□□ 0.84
UPF3A-202ENST00000375299 PCDH1Q08174 1060 aa20.28■□□□□ 0.84
UPF3A-202ENST00000375299 SCARB2Q14108 478 aa20.28■□□□□ 0.84
UPF3A-202ENST00000375299 ELOAQ14241 798 aaKnown RBP20.28■□□□□ 0.84
UPF3A-202ENST00000375299 XKR6Q5GH73 641 aa20.28■□□□□ 0.84
UPF3A-202ENST00000375299 GCNT6Q5T4J0 391 aa20.28■□□□□ 0.84
UPF3A-202ENST00000375299 GDPGP1Q6ZNW5 385 aa20.28■□□□□ 0.84
UPF3A-202ENST00000375299 VANGL1Q8TAA9 524 aaPredicted RBP20.28■□□□□ 0.84
UPF3A-202ENST00000375299 OVCA2Q8WZ82 227 aa20.28■□□□□ 0.84
UPF3A-202ENST00000375299 ABCB8Q9NUT2 735 aa20.28■□□□□ 0.84
UPF3A-202ENST00000375299 GPATCH2Q9NW75 528 aa20.28■□□□□ 0.84
UPF3A-202ENST00000375299 SLC16A5O15375 505 aa20.28■□□□□ 0.84
UPF3A-202ENST00000375299 TNFRSF21O75509 655 aa20.28■□□□□ 0.84
UPF3A-202ENST00000375299 ENDOUP21128 410 aaKnown RBP20.28■□□□□ 0.84
UPF3A-202ENST00000375299 XCR1P46094 333 aa20.28■□□□□ 0.84
UPF3A-202ENST00000375299 AP1S2P56377 157 aa20.28■□□□□ 0.84
UPF3A-202ENST00000375299 SEMG2Q02383 582 aa20.28■□□□□ 0.84
UPF3A-202ENST00000375299 ATP13A5Q4VNC0 1218 aa20.28■□□□□ 0.84
UPF3A-202ENST00000375299 C1orf52Q8N6N3 182 aaKnown RBP20.28■□□□□ 0.84
UPF3A-202ENST00000375299 DCAF4L2Q8NA75 395 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms