RNA–Protein interactions for RNA: ENST00000374426.6

CXCL12-202, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 470 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-202ENST00000374426 NT5CQ8TCD5 201 aa12.9□□□□□ -0.34
CXCL12-202ENST00000374426 MAGOHBQ96A72 148 aaKnown RBP12.9□□□□□ -0.34
CXCL12-202ENST00000374426 TMEM125Q96AQ2 219 aa12.9□□□□□ -0.34
CXCL12-202ENST00000374426 ARL15Q9NXU5 204 aa12.9□□□□□ -0.34
CXCL12-202ENST00000374426 ZFP69BQ9UJL9 534 aa12.9□□□□□ -0.34
CXCL12-202ENST00000374426 HRH3Q9Y5N1 445 aa12.9□□□□□ -0.34
CXCL12-202ENST00000374426 DNAJC13O75165 2243 aa12.89□□□□□ -0.35
CXCL12-202ENST00000374426 ZNF407Q9C0G0 2248 aa12.89□□□□□ -0.35
CXCL12-202ENST00000374426 A0A1B0GTH9 108 aa12.89□□□□□ -0.35
CXCL12-202ENST00000374426 TFECO14948 347 aaPredicted RBP12.89□□□□□ -0.35
CXCL12-202ENST00000374426 HIST1H2AGP0C0S8 130 aaPredicted RBP12.89□□□□□ -0.35
CXCL12-202ENST00000374426 HIST1H2ADP20671 130 aa12.89□□□□□ -0.35
CXCL12-202ENST00000374426 PTGS2P35354 604 aa12.89□□□□□ -0.35
CXCL12-202ENST00000374426 RFC3P40938 356 aa12.89□□□□□ -0.35
CXCL12-202ENST00000374426 SCTRP47872 440 aa12.89□□□□□ -0.35
CXCL12-202ENST00000374426 MEOX1P50221 254 aa12.89□□□□□ -0.35
CXCL12-202ENST00000374426 SKP1P63208 163 aa12.89□□□□□ -0.35
CXCL12-202ENST00000374426 RGS1Q08116 209 aa12.89□□□□□ -0.35
CXCL12-202ENST00000374426 CRYMQ14894 314 aa12.89□□□□□ -0.35
CXCL12-202ENST00000374426 NIPAL1Q6NVV3 410 aa12.89□□□□□ -0.35
CXCL12-202ENST00000374426 ABHD13Q7L211 337 aa12.89□□□□□ -0.35
CXCL12-202ENST00000374426 CD163Q86VB7 1156 aa12.89□□□□□ -0.35
CXCL12-202ENST00000374426 SULF2Q8IWU5 870 aa12.89□□□□□ -0.35
CXCL12-202ENST00000374426 EID3Q8N140 333 aa12.89□□□□□ -0.35
CXCL12-202ENST00000374426 MARVELD2Q8N4S9 558 aa12.89□□□□□ -0.35
CXCL12-202ENST00000374426 POGLUT1Q8NBL1 392 aa12.89□□□□□ -0.35
CXCL12-202ENST00000374426 APCDD1LQ8NCL9 501 aa12.89□□□□□ -0.35
CXCL12-202ENST00000374426 FAM57AQ8TBR7 257 aa12.89□□□□□ -0.35
CXCL12-202ENST00000374426 UTP15Q8TED0 518 aaKnown RBP12.89□□□□□ -0.35
CXCL12-202ENST00000374426 NEIL2Q969S2 332 aa12.89□□□□□ -0.35
CXCL12-202ENST00000374426 HIST1H2AHQ96KK5 128 aa12.89□□□□□ -0.35
CXCL12-202ENST00000374426 HIST1H2AJQ99878 128 aa12.89□□□□□ -0.35
CXCL12-202ENST00000374426 H2AFJQ9BTM1 129 aa12.89□□□□□ -0.35
CXCL12-202ENST00000374426 NECTIN3Q9NQS3 549 aa12.89□□□□□ -0.35
CXCL12-202ENST00000374426 COQ3Q9NZJ6 369 aa12.89□□□□□ -0.35
CXCL12-202ENST00000374426 KLF13Q9Y2Y9 288 aaPredicted RBP12.89□□□□□ -0.35
CXCL12-202ENST00000374426 AKAP6Q13023 2319 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 A8MUA0 341 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 C4orf51C9J302 202 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 FCHO1O14526 889 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 HS6ST1O60243 411 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 KRT38O76015 456 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 AHSGP02765 367 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 TPOP07202 933 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 CCDC175P0C221 793 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 IGFBP2P18065 325 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 PGAM1P18669 254 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 AHRP35869 848 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 HNF4AP41235 474 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 PGGT1BP53609 377 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 AP1S2P56377 157 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 RAB8AP61006 207 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 HYAL2Q12891 473 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 CYP1B1Q16678 543 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 CMPK2Q5EBM0 449 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 RASGEF1CQ8N431 466 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 ANKRD53Q8N9V6 530 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 C16orf52Q8NHV5 167 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 SLC5A11Q8WWX8 675 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 FBXL8Q96CD0 374 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 MS4A14Q96JA4 679 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 TSNARE1Q96NA8 513 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 DEFB126Q9BYW3 111 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 SLC6A16Q9GZN6 736 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 CLK4Q9HAZ1 481 aaKnown RBP12.88□□□□□ -0.35
CXCL12-202ENST00000374426 PRDM9Q9NQV7 894 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 ZFATQ9P243 1243 aa12.88□□□□□ -0.35
CXCL12-202ENST00000374426 TRBV11-1A0A0K0K1C0 115 aa12.87□□□□□ -0.35
CXCL12-202ENST00000374426 KLRC4-KLRK1H3BQV0 150 aa12.87□□□□□ -0.35
CXCL12-202ENST00000374426 FANCGO15287 622 aa12.87□□□□□ -0.35
CXCL12-202ENST00000374426 PEX1O43933 1283 aa12.87□□□□□ -0.35
CXCL12-202ENST00000374426 GUCA1CO95843 209 aa12.87□□□□□ -0.35
CXCL12-202ENST00000374426 SMIM10L1P0DMW3 83 aa12.87□□□□□ -0.35
CXCL12-202ENST00000374426 RNH1P13489 461 aaKnown RBP12.87□□□□□ -0.35
CXCL12-202ENST00000374426 NR0B1P51843 470 aaKnown RBP12.87□□□□□ -0.35
CXCL12-202ENST00000374426 IL2P60568 153 aa12.87□□□□□ -0.35
CXCL12-202ENST00000374426 REEP5Q00765 189 aa12.87□□□□□ -0.35
CXCL12-202ENST00000374426 CSHL1Q14406 222 aa12.87□□□□□ -0.35
CXCL12-202ENST00000374426 CCDC137Q6PK04 289 aaKnown RBP12.87□□□□□ -0.35
CXCL12-202ENST00000374426 CEP128Q6ZU80 1094 aa12.87□□□□□ -0.35
CXCL12-202ENST00000374426 MDGA2Q7Z553 956 aa12.87□□□□□ -0.35
CXCL12-202ENST00000374426 CNTN4Q8IWV2 1026 aa12.87□□□□□ -0.35
CXCL12-202ENST00000374426 TBC1D19Q8N5T2 526 aa12.87□□□□□ -0.35
CXCL12-202ENST00000374426 ZFP62Q8NB50 900 aaPredicted RBP12.87□□□□□ -0.35
CXCL12-202ENST00000374426 SMIM10Q96HG1 83 aa12.87□□□□□ -0.35
CXCL12-202ENST00000374426 AICDAQ9GZX7 198 aa12.87□□□□□ -0.35
CXCL12-202ENST00000374426 RHBGQ9H310 441 aa12.87□□□□□ -0.35
CXCL12-202ENST00000374426 KLHL31Q9H511 634 aa12.87□□□□□ -0.35
CXCL12-202ENST00000374426 NPDC1Q9NQX5 325 aaPredicted RBP12.87□□□□□ -0.35
CXCL12-202ENST00000374426 PLSCR2Q9NRY7 297 aa12.87□□□□□ -0.35
CXCL12-202ENST00000374426 SLC17A6Q9P2U8 582 aa12.87□□□□□ -0.35
CXCL12-202ENST00000374426 ZNF223Q9UK11 482 aaPredicted RBP12.87□□□□□ -0.35
CXCL12-202ENST00000374426 IKZF3Q9UKT9 509 aa12.87□□□□□ -0.35
CXCL12-202ENST00000374426 ZNF469Q96JG9 3925 aaPredicted RBP12.86□□□□□ -0.35
CXCL12-202ENST00000374426 NAV3Q8IVL0 2385 aa12.86□□□□□ -0.35
CXCL12-202ENST00000374426 GOLGA6L6A8MZA4 724 aa12.86□□□□□ -0.35
CXCL12-202ENST00000374426 PSMD12O00232 456 aaPredicted RBP12.86□□□□□ -0.35
CXCL12-202ENST00000374426 CDC40O60508 579 aaKnown RBP eCLIP12.86□□□□□ -0.35
CXCL12-202ENST00000374426 BANF1O75531 89 aa12.86□□□□□ -0.35
CXCL12-202ENST00000374426 ITGA10O75578 1167 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms