RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 AGR2O95994 175 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 C9P02748 559 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 HLA-EP13747 358 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 POU3F3P20264 500 aaPredicted RBP8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 BMP8BP34820 402 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 DCTP40126 519 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 BDKRB1P46663 353 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 HMGA2P52926 109 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 TMBIM6P55061 237 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 C2orf80Q0P641 193 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 CNPY1Q3B7I2 92 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 LRRC73Q5JTD7 316 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 RNF220Q5VTB9 566 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 MLIPQ5VWP3 458 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 EGFLAMQ63HQ2 1017 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 IYDQ6PHW0 289 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 SYCE2Q6PIF2 218 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 GPR141Q7Z602 305 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 ZZZ3Q8IYH5 903 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 C12orf76Q8N812 135 aaPredicted RBP8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 PIK3C3Q8NEB9 887 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 OR4A15Q8NGL6 344 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 NETO1Q8TDF5 533 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 IPCEF1Q8WWN9 437 aaPredicted RBP8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 FOXJ1Q92949 421 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 DPH2Q9BQC3 489 aaPredicted RBP8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 TBCDQ9BTW9 1192 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 MS4A8Q9BY19 250 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 PBX4Q9BYU1 374 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 TRIM4Q9C037 500 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 BTBD1Q9H0C5 482 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 S1PR5Q9H228 398 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 CHST8Q9H2A9 424 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 EPS8L2Q9H6S3 715 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 TRIM45Q9H8W5 580 aaPredicted RBP8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 FAM118AQ9NWS6 357 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 TRNAU1APQ9NX07 287 aaKnown RBP8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 FBXL12Q9NXK8 326 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 SCN3BQ9NY72 215 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 SH3BP4Q9P0V3 963 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 SPASTQ9UBP0 616 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 ITM2BQ9Y287 266 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 ENTPD2Q9Y5L3 495 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 HS3ST3A1Q9Y663 406 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 KIAA0100Q14667 2235 aaKnown RBP8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 LOC100130705A0A1B0GUX0 176 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 OTOL1A6NHN0 477 aaPredicted RBP8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 VGLL3A8MV65 326 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 C9JVG2 144 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 VILLO15195 856 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 MID1O15344 667 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 TPST1O60507 370 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 TNFRSF21O75509 655 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 SERPINB7O75635 380 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 CPNE6O95741 557 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 LAMP1P11279 417 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 ACADMP11310 421 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 CMPK1P30085 196 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 GALK1P51570 392 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 MAPK12P53778 367 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 MAPK10P53779 464 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 TPD52P55327 224 aaPredicted RBP8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 TAS2R38P59533 333 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 STXBP1P61764 594 aaKnown RBP8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 LSAMPQ13449 338 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 DDX39BQ13838 428 aaKnown RBP8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 SELPLGQ14242 412 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 NFE2L1Q14494 772 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 KRT33BQ14525 404 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 COL19A1Q14993 1142 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 SHHQ15465 462 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 ADPRMQ3LIE5 342 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 NADK2Q4G0N4 442 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 IFI44LQ53G44 452 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 PYCR3Q53H96 274 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 GCNT6Q5T4J0 391 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 KDM4DQ6B0I6 523 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 REEP3Q6NUK4 255 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 ZNF773Q6PK81 442 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 DCP2Q8IU60 420 aaKnown RBP8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 CROCCP3Q8IVE0 287 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 DEPDC4Q8N2C3 294 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 ZNF786Q8N393 782 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 OR7A2PQ8NGA2 310 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 FBXO30Q8TB52 745 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 SFXN5Q8TD22 340 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 FBLIM1Q8WUP2 373 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 CYGBQ8WWM9 190 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 GEMIN6Q8WXD5 167 aaKnown RBP8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 NEURL3Q96EH8 262 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 PDXPQ96GD0 296 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 EGLN2Q96KS0 407 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 KCNC2Q96PR1 638 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 ZNF607Q96SK3 696 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 DOK1Q99704 481 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 APOOQ9BUR5 198 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 YIPF3Q9GZM5 350 aa8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 RBM38Q9H0Z9 239 aaKnown RBP8.34□□□□□ -1.07
SNRNP40-202ENST00000373720 A4GALTQ9NPC4 353 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms