RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 SPANXN2Q5MJ10 180 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 ZNF362Q5T0B9 420 aaPredicted RBP11.65□□□□□ -0.54
CLIP3-201ENST00000360535 TNFAIP8L2Q6P589 184 aaPredicted RBP11.65□□□□□ -0.54
CLIP3-201ENST00000360535 USP43Q70EL4 1123 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 TSEN54Q7Z6J9 526 aaKnown RBP11.65□□□□□ -0.54
CLIP3-201ENST00000360535 GALNT13Q8IUC8 556 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 CYP4Z2PQ8N1L4 340 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 AQP11Q8NBQ7 271 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 WDR48Q8TAF3 677 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 CD99L2Q8TCZ2 262 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 MMP27Q9H306 513 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 ZNF226Q9NYT6 803 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 STOX2Q9P2F5 926 aaPredicted RBP11.65□□□□□ -0.54
CLIP3-201ENST00000360535 ERVW-1Q9UQF0 538 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 CCL26Q9Y258 94 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 ITM2BQ9Y287 266 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 USP34Q70CQ2 3546 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 ANAPC1Q9H1A4 1944 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 CLDN24A6NM45 220 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 H3BN98 237 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 NUAK1O60285 661 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 MFN2O95140 757 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 MED26O95402 600 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 KLK1P06870 262 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 MAPK8P45983 427 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 TAB1Q15750 504 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 C10orf62Q5T681 223 aaPredicted RBP11.65□□□□□ -0.54
CLIP3-201ENST00000360535 NANOGNBQ7Z5D8 188 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 CBARPQ8N350 705 aaPredicted RBP11.65□□□□□ -0.54
CLIP3-201ENST00000360535 METTL4Q8N3J2 472 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 CHCHD4Q8N4Q1 142 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 ZNF740Q8NDX6 193 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 OR8J2Q8NGG1 315 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 ITPKCQ96DU7 683 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 NRTNQ99748 197 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 RETREG1Q9H6L5 497 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 CTPS2Q9NRF8 586 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 DNAJC27Q9NZQ0 273 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 C5AR2Q9P296 337 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 SH2B3Q9UQQ2 575 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 SCN5AQ14524 2016 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 CDH23Q9H251 3354 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 PRAMEF33A0A0G2JMD5 474 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 LOC110117498-PIK3R3F6TDL0 507 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 WWP2O00308 870 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 ADAMDEC1O15204 470 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 GREM1O60565 184 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 PRAMEF10O60809 474 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 APOL3O95236 402 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 SOX3P41225 446 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 TAS2R50P59544 299 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 ARSIQ5FYB1 569 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 TMEM220Q6QAJ8 160 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 WDR20Q8TBZ3 569 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 SLC35B4Q969S0 331 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 OTUB1Q96FW1 271 aaPredicted RBP11.65□□□□□ -0.54
CLIP3-201ENST00000360535 DMRTB1Q96MA1 342 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 CEP44Q9C0F1 390 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 GPATCH2Q9NW75 528 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 IFT52Q9Y366 437 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 PCM1Q15154 2024 aa11.65□□□□□ -0.55
CLIP3-201ENST00000360535 FRMPD3Q5JV73 1810 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 PRAMEF25A6NGN4 478 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 GFYI3L273 518 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 GADD45GO95257 159 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 RGS6P49758 472 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 SP3Q02447 781 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 PTGES3Q15185 160 aaKnown RBP11.64□□□□□ -0.55
CLIP3-201ENST00000360535 SLC5A12Q1EHB4 618 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 GGTA1PQ4G0N0 100 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 MPPE1Q53F39 396 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 GCNT6Q5T4J0 391 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 UBE2UQ5VVX9 321 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 ASTLQ6HA08 431 aaPredicted RBP11.64□□□□□ -0.55
CLIP3-201ENST00000360535 SLC46A3Q7Z3Q1 461 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 CFAP206Q8IYR0 622 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 SLC34A3Q8N130 599 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 CELF5Q8N6W0 485 aaKnown RBP11.64□□□□□ -0.55
CLIP3-201ENST00000360535 RAB8BQ92930 207 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 EPYCQ99645 322 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 ELAC1Q9H777 363 aaKnown RBP11.64□□□□□ -0.55
CLIP3-201ENST00000360535 SLC25A13Q9UJS0 675 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 PLAGL1Q9UM63 463 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 PRKAB1Q9Y478 270 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 SCN8AQ9UQD0 1980 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 ZW10O43264 779 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 TPD52L2O43399 206 aaKnown RBP11.64□□□□□ -0.55
CLIP3-201ENST00000360535 CATP04040 527 aaKnown RBP11.64□□□□□ -0.55
CLIP3-201ENST00000360535 CNR2P34972 360 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 PTGER1P34995 402 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 AP1S2P56377 157 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 SLBPQ14493 270 aaKnown RBP eCLIP11.64□□□□□ -0.55
CLIP3-201ENST00000360535 TRIM60Q495X7 471 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 IQCCQ4KMZ1 466 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 LIPJQ5W064 366 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 TMEM203Q969S6 136 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 PPCDCQ96CD2 204 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 MGLLQ99685 303 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 FADS2P1A8MWK0 482 aa11.64□□□□□ -0.55
CLIP3-201ENST00000360535 RTCAO00442 366 aaKnown RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms