RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 COPG2Q9UBF2 871 aa17.31■□□□□ 0.36
CLN3-202ENST00000355477 ZNF490Q9ULM2 529 aaPredicted RBP17.31■□□□□ 0.36
CLN3-202ENST00000355477 ACOT9Q9Y305 439 aa17.31■□□□□ 0.36
CLN3-202ENST00000355477 POLEQ07864 2286 aa17.31■□□□□ 0.36
CLN3-202ENST00000355477 ICE1Q9Y2F5 2266 aa17.3■□□□□ 0.36
CLN3-202ENST00000355477 MAGEB17A8MXT2 336 aa17.3■□□□□ 0.36
CLN3-202ENST00000355477 UBXN8O00124 270 aa17.3■□□□□ 0.36
CLN3-202ENST00000355477 CLGNO14967 610 aa17.3■□□□□ 0.36
CLN3-202ENST00000355477 WFS1O76024 890 aa17.3■□□□□ 0.36
CLN3-202ENST00000355477 C2P06681 752 aa17.3■□□□□ 0.36
CLN3-202ENST00000355477 CTAGE8P0CG41 777 aa17.3■□□□□ 0.36
CLN3-202ENST00000355477 ICAM2P13598 275 aa17.3■□□□□ 0.36
CLN3-202ENST00000355477 CD22P20273 847 aa17.3■□□□□ 0.36
CLN3-202ENST00000355477 HNRNPH1P31943 449 aaKnown RBP17.3■□□□□ 0.36
CLN3-202ENST00000355477 AGTR2P50052 363 aa17.3■□□□□ 0.36
CLN3-202ENST00000355477 DOC2AQ14183 400 aa17.3■□□□□ 0.36
CLN3-202ENST00000355477 ZNF169Q14929 603 aaPredicted RBP17.3■□□□□ 0.36
CLN3-202ENST00000355477 ABRAXAS2Q15018 415 aa17.3■□□□□ 0.36
CLN3-202ENST00000355477 UAP1Q16222 522 aaPredicted RBP17.3■□□□□ 0.36
CLN3-202ENST00000355477 SFT2D3Q587I9 215 aa17.3■□□□□ 0.36
CLN3-202ENST00000355477 XKR6Q5GH73 641 aa17.3■□□□□ 0.36
CLN3-202ENST00000355477 NIPAL1Q6NVV3 410 aa17.3■□□□□ 0.36
CLN3-202ENST00000355477 CTAGE4Q8IX94 777 aa17.3■□□□□ 0.36
CLN3-202ENST00000355477 KCTD4Q8WVF5 259 aa17.3■□□□□ 0.36
CLN3-202ENST00000355477 WDR34Q96EX3 536 aa17.3■□□□□ 0.36
CLN3-202ENST00000355477 BARD1Q99728 777 aaKnown RBP17.3■□□□□ 0.36
CLN3-202ENST00000355477 CDC42EP4Q9H3Q1 356 aaKnown RBP17.3■□□□□ 0.36
CLN3-202ENST00000355477 EHD1Q9H4M9 534 aa17.3■□□□□ 0.36
CLN3-202ENST00000355477 ACSS3Q9H6R3 686 aa17.3■□□□□ 0.36
CLN3-202ENST00000355477 NT5DC2Q9H857 520 aa17.3■□□□□ 0.36
CLN3-202ENST00000355477 C19orf25Q9UFG5 118 aaPredicted RBP17.3■□□□□ 0.36
CLN3-202ENST00000355477 MTRF1LQ9UGC7 380 aaKnown RBP17.3■□□□□ 0.36
CLN3-202ENST00000355477 COPG1Q9Y678 874 aaKnown RBP17.3■□□□□ 0.36
CLN3-202ENST00000355477 A0A0G2JN53 185 aa17.29■□□□□ 0.36
CLN3-202ENST00000355477 LRIT2A6NDA9 550 aa17.29■□□□□ 0.36
CLN3-202ENST00000355477 URADA6NGE7 173 aa17.29■□□□□ 0.36
CLN3-202ENST00000355477 FAM227AF5H4B4 570 aa17.29■□□□□ 0.36
CLN3-202ENST00000355477 CCNT2O60583 730 aaKnown RBP17.29■□□□□ 0.36
CLN3-202ENST00000355477 B4GALT2O60909 372 aa17.29■□□□□ 0.36
CLN3-202ENST00000355477 KERAO60938 352 aa17.29■□□□□ 0.36
CLN3-202ENST00000355477 F10P00742 488 aa17.29■□□□□ 0.36
CLN3-202ENST00000355477 S100BP04271 92 aaPredicted RBP17.29■□□□□ 0.36
CLN3-202ENST00000355477 PHBP35232 272 aa17.29■□□□□ 0.36
CLN3-202ENST00000355477 SKP1P63208 163 aa17.29■□□□□ 0.36
CLN3-202ENST00000355477 BTN3A2P78410 334 aa17.29■□□□□ 0.36
CLN3-202ENST00000355477 BTG2P78543 158 aa17.29■□□□□ 0.36
CLN3-202ENST00000355477 TLR1Q15399 786 aa17.29■□□□□ 0.36
CLN3-202ENST00000355477 NR6A1Q15406 480 aa17.29■□□□□ 0.36
CLN3-202ENST00000355477 PDK4Q16654 411 aa17.29■□□□□ 0.36
CLN3-202ENST00000355477 BTBD16Q32M84 506 aa17.29■□□□□ 0.36
CLN3-202ENST00000355477 PLAG1Q6DJT9 500 aa17.29■□□□□ 0.36
CLN3-202ENST00000355477 KRT78Q8N1N4 520 aa17.29■□□□□ 0.36
CLN3-202ENST00000355477 FAM26EQ8N5C1 309 aa17.29■□□□□ 0.36
CLN3-202ENST00000355477 CCT6BQ92526 530 aa17.29■□□□□ 0.36
CLN3-202ENST00000355477 HAS2Q92819 552 aa17.29■□□□□ 0.36
CLN3-202ENST00000355477 MS4A6EQ96DS6 147 aa17.29■□□□□ 0.36
CLN3-202ENST00000355477 FUT8Q9BYC5 575 aa17.29■□□□□ 0.36
CLN3-202ENST00000355477 PITHD1Q9GZP4 211 aaPredicted RBP17.29■□□□□ 0.36
CLN3-202ENST00000355477 SNX15Q9NRS6 342 aa17.29■□□□□ 0.36
CLN3-202ENST00000355477 NUDT4Q9NZJ9 180 aa17.29■□□□□ 0.36
CLN3-202ENST00000355477 A0A087X1B8 175 aa17.28■□□□□ 0.36
CLN3-202ENST00000355477 SUPT3HB4E1H0 165 aa17.28■□□□□ 0.36
CLN3-202ENST00000355477 SUPT3HO75486 399 aa17.28■□□□□ 0.36
CLN3-202ENST00000355477 CBX6O95503 412 aa17.28■□□□□ 0.36
CLN3-202ENST00000355477 ACSL3O95573 720 aa17.28■□□□□ 0.36
CLN3-202ENST00000355477 ALDOAP04075 364 aaKnown RBP17.28■□□□□ 0.36
CLN3-202ENST00000355477 TUBB4AP04350 444 aa17.28■□□□□ 0.36
CLN3-202ENST00000355477 MTHFD2P13995 350 aa17.28■□□□□ 0.36
CLN3-202ENST00000355477 TSFMP43897 325 aaKnown RBP17.28■□□□□ 0.36
CLN3-202ENST00000355477 STXBP1P61764 594 aaKnown RBP17.28■□□□□ 0.36
CLN3-202ENST00000355477 ARG2P78540 354 aa17.28■□□□□ 0.36
CLN3-202ENST00000355477 RUNX2Q13950 521 aa17.28■□□□□ 0.36
CLN3-202ENST00000355477 EIF2S3LQ2VIR3 472 aaKnown RBP17.28■□□□□ 0.36
CLN3-202ENST00000355477 GLE1Q53GS7 698 aaKnown RBP17.28■□□□□ 0.36
CLN3-202ENST00000355477 CA13Q8N1Q1 262 aa17.28■□□□□ 0.36
CLN3-202ENST00000355477 TTLQ8NG68 377 aa17.28■□□□□ 0.36
CLN3-202ENST00000355477 OR1N1Q8NGS0 311 aa17.28■□□□□ 0.36
CLN3-202ENST00000355477 GPR78Q96P69 363 aa17.28■□□□□ 0.36
CLN3-202ENST00000355477 FMO2Q99518 471 aa17.28■□□□□ 0.36
CLN3-202ENST00000355477 RHBGQ9H310 441 aa17.28■□□□□ 0.36
CLN3-202ENST00000355477 CLK4Q9HAZ1 481 aaKnown RBP17.28■□□□□ 0.36
CLN3-202ENST00000355477 A0A096LPK6 155 aa17.27■□□□□ 0.36
CLN3-202ENST00000355477 ANKDD1BA6NHY2 528 aa17.27■□□□□ 0.36
CLN3-202ENST00000355477 A8MUI8 341 aa17.27■□□□□ 0.36
CLN3-202ENST00000355477 KIF2AO00139 706 aaPredicted RBP17.27■□□□□ 0.36
CLN3-202ENST00000355477 PRMT3O60678 531 aa17.27■□□□□ 0.36
CLN3-202ENST00000355477 CLEC3AO75596 197 aa17.27■□□□□ 0.36
CLN3-202ENST00000355477 WDPCPO95876 746 aa17.27■□□□□ 0.36
CLN3-202ENST00000355477 RNH1P13489 461 aaKnown RBP17.27■□□□□ 0.36
CLN3-202ENST00000355477 JAK1P23458 1154 aa17.27■□□□□ 0.36
CLN3-202ENST00000355477 TNFSF10P50591 281 aa17.27■□□□□ 0.36
CLN3-202ENST00000355477 OR4D2P58180 307 aa17.27■□□□□ 0.36
CLN3-202ENST00000355477 ACTN3Q08043 901 aaPredicted RBP17.27■□□□□ 0.36
CLN3-202ENST00000355477 CHIT1Q13231 466 aa17.27■□□□□ 0.36
CLN3-202ENST00000355477 ADPRMQ3LIE5 342 aa17.27■□□□□ 0.36
CLN3-202ENST00000355477 FCRLBQ6BAA4 426 aa17.27■□□□□ 0.36
CLN3-202ENST00000355477 H3F3CQ6NXT2 135 aa17.27■□□□□ 0.36
CLN3-202ENST00000355477 PAPD4Q6PIY7 484 aaKnown RBP17.27■□□□□ 0.36
CLN3-202ENST00000355477 CEP128Q6ZU80 1094 aa17.27■□□□□ 0.36
CLN3-202ENST00000355477 LRRC70Q7Z2Q7 622 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms