RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 OR52B2Q96RD2 323 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 M0QX08 132 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 CDK6Q00534 326 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 RFTN1Q14699 578 aaPredicted RBP12.22□□□□□ -0.45
SDC3-201ENST00000336798 PON3Q15166 354 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 ZNF662Q6ZS27 426 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 OR2AP1Q8NGE2 309 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 CANT1Q8WVQ1 401 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 RADILQ96JH8 1075 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 NANSQ9NR45 359 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 UPK3BL1B0FP48 263 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 UPK3BL2E5RIL1 263 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 ENTPD6O75354 484 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 OGDHQ02218 1023 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 TPGS2Q68CL5 300 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 C3orf33Q6P1S2 294 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 CD180Q99467 661 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 FANCFQ9NPI8 374 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 TDP1Q9NUW8 608 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 AJAP1Q9UKB5 411 aaPredicted RBP12.22□□□□□ -0.45
SDC3-201ENST00000336798 A0A0G2JLL6 359 aaPredicted RBP12.22□□□□□ -0.45
SDC3-201ENST00000336798 AHSA1O95433 338 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 ANXA8P13928 327 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 ANKDD1AQ495B1 522 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 MFSD5Q6N075 450 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 PRRT2Q7Z6L0 340 aaPredicted RBP12.22□□□□□ -0.45
SDC3-201ENST00000336798 IFNL1Q8IU54 200 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 TGM7Q96PF1 710 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 CA14Q9ULX7 337 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 DIP2CQ9Y2E4 1556 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 DCCP43146 1447 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 RCBTB2O95199 551 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 SFTPBP07988 381 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 GLP1RP43220 463 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 AFF1P51825 1210 aaKnown RBP12.21□□□□□ -0.45
SDC3-201ENST00000336798 DAG1Q14118 895 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 ZNF792Q3KQV3 632 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 NIPAL1Q6NVV3 410 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 TICAM1Q8IUC6 712 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 SPAG16Q8N0X2 631 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 IL22RA1Q8N6P7 574 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 FANK1Q8TC84 345 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 ACOT12Q8WYK0 555 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 ZNF516Q92618 1163 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 AP1S3Q96PC3 154 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 ALPK1Q96QP1 1244 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 FTSJ1Q9UET6 329 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 NOCTQ9UK39 431 aaKnown RBP12.21□□□□□ -0.45
SDC3-201ENST00000336798 RPH3AQ9Y2J0 694 aaPredicted RBP12.21□□□□□ -0.45
SDC3-201ENST00000336798 ARHGAP23Q9P227 1491 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 NPIPA2E9PIF3 369 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 NPIPA3F8WFD2 350 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 XPNPEP2O43895 674 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 ARRB1P49407 418 aaPredicted RBP12.21□□□□□ -0.45
SDC3-201ENST00000336798 TPRG1LQ5T0D9 272 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 OR4K1Q8NGD4 311 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 SLC5A11Q8WWX8 675 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 KIAA1143Q96AT1 154 aaPredicted RBP12.21□□□□□ -0.45
SDC3-201ENST00000336798 HSH2DQ96JZ2 352 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 FCRL5Q96RD9 977 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 PCDH10Q9P2E7 1040 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 A6NLC8 198 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 MANBAO00462 879 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 PPM1BO75688 479 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 G6PDP11413 515 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 TXNRD3NBQ6F5E7 133 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 TMEM151BQ8IW70 566 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 CCDC116Q8IYX3 515 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 SHKBP1Q8TBC3 707 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 PSKH2Q96QS6 385 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 SLC6A7Q99884 636 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 TMEM121BQ9BXQ6 578 aaPredicted RBP12.21□□□□□ -0.45
SDC3-201ENST00000336798 TRIM36Q9NQ86 728 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 HRASLS2Q9NWW9 162 aa12.21□□□□□ -0.45
SDC3-201ENST00000336798 CIB4A0PJX0 185 aa12.21□□□□□ -0.46
SDC3-201ENST00000336798 CNOT4O95628 575 aaKnown RBP12.21□□□□□ -0.46
SDC3-201ENST00000336798 MAGEA11P43364 429 aa12.21□□□□□ -0.46
SDC3-201ENST00000336798 FASLGP48023 281 aa12.21□□□□□ -0.46
SDC3-201ENST00000336798 CDH11P55287 796 aa12.21□□□□□ -0.46
SDC3-201ENST00000336798 SLC37A3Q8NCC5 494 aa12.21□□□□□ -0.46
SDC3-201ENST00000336798 EFCAB11Q9BUY7 163 aa12.21□□□□□ -0.46
SDC3-201ENST00000336798 WRAP73Q9P2S5 460 aaPredicted RBP12.21□□□□□ -0.46
SDC3-201ENST00000336798 H3BNX3 289 aa12.21□□□□□ -0.46
SDC3-201ENST00000336798 H7BY64 318 aa12.21□□□□□ -0.46
SDC3-201ENST00000336798 UBE2UQ5VVX9 321 aa12.21□□□□□ -0.46
SDC3-201ENST00000336798 OR5T1Q8NG75 326 aa12.21□□□□□ -0.46
SDC3-201ENST00000336798 OR9I1Q8NGQ6 314 aa12.21□□□□□ -0.46
SDC3-201ENST00000336798 PRAP1Q96NZ9 151 aa12.21□□□□□ -0.46
SDC3-201ENST00000336798 POLDIP3Q9BY77 421 aaKnown RBP12.21□□□□□ -0.46
SDC3-201ENST00000336798 SPATA6Q9NWH7 488 aaPredicted RBP12.21□□□□□ -0.46
SDC3-201ENST00000336798 SQORQ9Y6N5 450 aa12.21□□□□□ -0.46
SDC3-201ENST00000336798 TEX13CA0A0J9YWL9 993 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 LOC100130705A0A1B0GUX0 176 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 A0A1B0GV50 99 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 hCG_1807616A0A1W2PRN6 198 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 LEFTY2O00292 366 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 ADAMTS3O15072 1205 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 FGF18O76093 207 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 SELENOVP59797 346 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 ST3GAL4Q11206 333 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms