RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 BRINP2Q9C0B6 783 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 TPT1P8Q9HAU6 139 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 FAM120CQ9NX05 1096 aaKnown RBP11.13□□□□□ -0.63
VPS39-201ENST00000318006 MRPS33Q9Y291 106 aaKnown RBP11.13□□□□□ -0.63
VPS39-201ENST00000318006 NOP16Q9Y3C1 178 aaKnown RBP11.13□□□□□ -0.63
VPS39-201ENST00000318006 ANKRD66B4E2M5 251 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 CNTN5O94779 1100 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 ALPPP05187 535 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 RB1P06400 928 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 ACVR2AP27037 513 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 GNALP38405 381 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 OR3A3P47888 321 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 OR3A2P47893 321 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 DIO3P55073 304 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 RPP38P78345 283 aaKnown RBP11.13□□□□□ -0.63
VPS39-201ENST00000318006 EIPR1Q53HC9 387 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 MEDAGQ5VYS4 303 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 ZCCHC12Q6PEW1 402 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 RPS27LQ71UM5 84 aaKnown RBP11.13□□□□□ -0.63
VPS39-201ENST00000318006 CMTR2Q8IYT2 770 aaKnown RBP11.13□□□□□ -0.63
VPS39-201ENST00000318006 ZNF461Q8TAF7 563 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 FAM110BQ8TC76 370 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 SLC22A17Q8WUG5 538 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 NKD1Q969G9 470 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 ANKMY1Q9P2S6 941 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 TACSTD2P09758 323 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 ALPIP09923 528 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 ITPKBP27987 946 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 GGT5P36269 586 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 PLA2G16P53816 162 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 SLC3A1Q07837 685 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 LDLRAD1Q5T700 205 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 SHQ1Q6PI26 577 aaKnown RBP11.12□□□□□ -0.63
VPS39-201ENST00000318006 ZNF627Q7L945 461 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 TCEANCQ8N8B7 351 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 OR2AP1Q8NGE2 309 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 KIAA1191Q96A73 305 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 KCNA7Q96RP8 456 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 SPATA9Q9BWV2 254 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 MEAF6Q9HAF1 191 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 WDR6Q9NNW5 1121 aaKnown RBP11.12□□□□□ -0.63
VPS39-201ENST00000318006 A0A1W2PQ45 241 aaPredicted RBP11.12□□□□□ -0.63
VPS39-201ENST00000318006 A0A1W2PQY0 241 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 AOC2O75106 756 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 SNRPD2P62316 118 aaKnown RBP11.12□□□□□ -0.63
VPS39-201ENST00000318006 CYBRD1Q53TN4 286 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 ATG9BQ674R7 924 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 PIM3Q86V86 326 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 LILRB4Q8NHJ6 448 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 SLC2A13Q96QE2 648 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 HAPLN2Q9GZV7 340 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 TMEM168Q9H0V1 697 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 ZDHHC3Q9NYG2 299 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 MAGED1Q9Y5V3 778 aaPredicted RBP11.12□□□□□ -0.63
VPS39-201ENST00000318006 C10orf71Q711Q0 1435 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 ZNF623O75123 536 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 GPR32O75388 356 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 ERVK-21P61565 698 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 FRG2Q64ET8 278 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 NOXA1Q86UR1 476 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 NATD1Q8N6N6 113 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 ZNF676Q8N7Q3 588 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 FBXO27Q8NI29 283 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 GATAD2BQ8WXI9 593 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 S100A16Q96FQ6 103 aaKnown RBP11.12□□□□□ -0.63
VPS39-201ENST00000318006 SH3YL1Q96HL8 342 aaPredicted RBP11.12□□□□□ -0.63
VPS39-201ENST00000318006 MYRFLQ96LU7 910 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 HSPA12BQ96MM6 686 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 SCGB3A2Q96PL1 93 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 TSGA13Q96PP4 275 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 FRG2BQ96QU4 278 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 DERL2Q9GZP9 239 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 ABCG5Q9H222 651 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 MGAT4BQ9UQ53 548 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 CDH10Q9Y6N8 788 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 CDC7O00311 574 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 PRAMEF11O60813 436 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 PRKCGP05129 697 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 HSD17B1P14061 328 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 IVDP26440 423 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 TAS2R43P59537 309 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 ZNF630Q2M218 657 aaPredicted RBP11.12□□□□□ -0.63
VPS39-201ENST00000318006 SNAP47Q5SQN1 464 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 SLC25A25Q6KCM7 469 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 GDPD4Q6W3E5 623 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 SLC36A4Q6YBV0 504 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 TMED4Q7Z7H5 227 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 PDZD9Q8IXQ8 264 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 SAMD12Q8N8I0 201 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 MFSD2AQ8NA29 543 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 OR6K6Q8NGW6 343 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 MCCC1Q96RQ3 725 aaPredicted RBP11.12□□□□□ -0.63
VPS39-201ENST00000318006 PFDN5Q99471 154 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 SLC32A1Q9H598 525 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 CERS4Q9HA82 394 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 ARMC1Q9NVT9 282 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 COLEC10Q9Y6Z7 277 aa11.12□□□□□ -0.63
VPS39-201ENST00000318006 NARSO43776 548 aaKnown RBP11.11□□□□□ -0.63
VPS39-201ENST00000318006 PVALBP20472 110 aaPredicted RBP11.11□□□□□ -0.63
VPS39-201ENST00000318006 EDNRAP25101 427 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms