RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 TMEM156Q8N614 296 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 ZFP62Q8NB50 900 aaPredicted RBP13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 MCUQ8NE86 351 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 OR4K1Q8NGD4 311 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 OR5T3Q8NGG3 340 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 C16orf52Q8NHV5 167 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 AARSD1Q9BTE6 412 aaKnown RBP13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 ATG10Q9H0Y0 220 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 PRDM9Q9NQV7 894 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 PLSCR2Q9NRY7 297 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 C20orf96Q9NUD7 363 aaPredicted RBP13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 TNFRSF10DQ9UBN6 386 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 SH2B3Q9UQQ2 575 aa13.82□□□□□ -0.2
CCDC88B-201ENST00000301897 ZCWPW2A0A1B0GU75 182 aa13.81□□□□□ -0.2
CCDC88B-201ENST00000301897 TCRBV16S1A1N1A0A5B0 115 aa13.81□□□□□ -0.2
CCDC88B-201ENST00000301897 SYNDIG1LA6NDD5 238 aa13.81□□□□□ -0.2
CCDC88B-201ENST00000301897 CDC40O60508 579 aaKnown RBP eCLIP13.81□□□□□ -0.2
CCDC88B-201ENST00000301897 MSX1P28360 303 aa13.81□□□□□ -0.2
CCDC88B-201ENST00000301897 AHRP35869 848 aa13.81□□□□□ -0.2
CCDC88B-201ENST00000301897 CLCN2P51788 898 aa13.81□□□□□ -0.2
CCDC88B-201ENST00000301897 ART1P52961 327 aa13.81□□□□□ -0.2
CCDC88B-201ENST00000301897 AP1S2P56377 157 aa13.81□□□□□ -0.2
CCDC88B-201ENST00000301897 CMPK2Q5EBM0 449 aa13.81□□□□□ -0.2
CCDC88B-201ENST00000301897 KIAA0408Q6ZU52 694 aa13.81□□□□□ -0.2
CCDC88B-201ENST00000301897 SULF2Q8IWU5 870 aa13.81□□□□□ -0.2
CCDC88B-201ENST00000301897 CYP4Z2PQ8N1L4 340 aa13.81□□□□□ -0.2
CCDC88B-201ENST00000301897 TRPV3Q8NET8 790 aa13.81□□□□□ -0.2
CCDC88B-201ENST00000301897 NT5CQ8TCD5 201 aa13.81□□□□□ -0.2
CCDC88B-201ENST00000301897 EEF1AKMT1Q8WVE0 214 aa13.81□□□□□ -0.2
CCDC88B-201ENST00000301897 ATL1Q8WXF7 558 aa13.81□□□□□ -0.2
CCDC88B-201ENST00000301897 ALKBH8Q96BT7 664 aaKnown RBP13.81□□□□□ -0.2
CCDC88B-201ENST00000301897 ZNF559Q9BR84 538 aa13.81□□□□□ -0.2
CCDC88B-201ENST00000301897 TRIM54Q9BYV2 358 aa13.81□□□□□ -0.2
CCDC88B-201ENST00000301897 TIMMDC1Q9NPL8 285 aa13.81□□□□□ -0.2
CCDC88B-201ENST00000301897 ZFP69BQ9UJL9 534 aa13.81□□□□□ -0.2
CCDC88B-201ENST00000301897 ACANP16112 2415 aa13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 IGKV3D-11A0A0A0MRZ8 115 aa13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 FAM221AA4D161 298 aa13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 ZNHIT1O43257 154 aa13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 HS6ST1O60243 411 aa13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 HAUS5O94927 633 aa13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 TUBB4AP04350 444 aa13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 SERPIND1P05546 499 aa13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 HOXD4P09016 255 aaPredicted RBP13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 TFF3Q07654 80 aa13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 DHX9Q08211 1270 aaKnown RBP13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 BBS9Q3SYG4 887 aa13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 MBOAT1Q6ZNC8 495 aa13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 RGS9BPQ6ZS82 235 aa13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 GPALPP1Q8IXQ4 340 aa13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 CLYBLQ8N0X4 340 aa13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 MARVELD2Q8N4S9 558 aa13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 NFAM1Q8NET5 270 aaPredicted RBP13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 B3GNT7Q8NFL0 401 aa13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 MYRIPQ8NFW9 859 aa13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 OR56A3Q8NH54 315 aa13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 SNF8Q96H20 258 aa13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 CCDC77Q9BR77 488 aa13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 ARL15Q9NXU5 204 aa13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 ADAMTS6Q9UKP5 1117 aa13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 RNF6Q9Y252 685 aa13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 MMACHCQ9Y4U1 282 aa13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 MAD1L1Q9Y6D9 718 aa13.8□□□□□ -0.2
CCDC88B-201ENST00000301897 TOXO94900 526 aa13.79□□□□□ -0.2
CCDC88B-201ENST00000301897 ZNF888P0CJ79 500 aaPredicted RBP13.79□□□□□ -0.2
CCDC88B-201ENST00000301897 MAOAP21397 527 aa13.79□□□□□ -0.2
CCDC88B-201ENST00000301897 SCTRP47872 440 aa13.79□□□□□ -0.2
CCDC88B-201ENST00000301897 VPS41P49754 854 aa13.79□□□□□ -0.2
CCDC88B-201ENST00000301897 TERF1P54274 439 aa13.79□□□□□ -0.2
CCDC88B-201ENST00000301897 CSHL1Q14406 222 aa13.79□□□□□ -0.2
CCDC88B-201ENST00000301897 TRIP13Q15645 432 aaPredicted RBP13.79□□□□□ -0.2
CCDC88B-201ENST00000301897 ANKRD22Q5VYY1 191 aa13.79□□□□□ -0.2
CCDC88B-201ENST00000301897 TMEM200AQ86VY9 491 aa13.79□□□□□ -0.2
CCDC88B-201ENST00000301897 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.79□□□□□ -0.2
CCDC88B-201ENST00000301897 CHDHQ8NE62 594 aaPredicted RBP13.79□□□□□ -0.2
CCDC88B-201ENST00000301897 UTP15Q8TED0 518 aaKnown RBP13.79□□□□□ -0.2
CCDC88B-201ENST00000301897 SERPINB12Q96P63 405 aa13.79□□□□□ -0.2
CCDC88B-201ENST00000301897 NPDC1Q9NQX5 325 aaPredicted RBP13.79□□□□□ -0.2
CCDC88B-201ENST00000301897 YARS2Q9Y2Z4 477 aaKnown RBP13.79□□□□□ -0.2
CCDC88B-201ENST00000301897 TRBV11-1A0A0K0K1C0 115 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 FAM90A27PA6NNH2 459 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 GOLGA6L6A8MZA4 724 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 ACOT7O00154 380 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 ITGA10O75578 1167 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 KRT14P02533 472 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 RFC3P40938 356 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 SSR4P51571 173 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 IL2P60568 153 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 OLR1P78380 273 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 BTG2P78543 158 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 PMPCAQ10713 525 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 PHKG1Q16816 387 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 HSP90AA5PQ58FG0 334 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 SPNS2Q8IVW8 549 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 APCDD1LQ8NCL9 501 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 CREB3L4Q8TEY5 395 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 SLC5A11Q8WWX8 675 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 NINJ1Q92982 152 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 FBXL8Q96CD0 374 aa13.78□□□□□ -0.2
CCDC88B-201ENST00000301897 LINGO1Q96FE5 620 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms