RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 TUBB6Q9BUF5 446 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 CDC42EP4Q9H3Q1 356 aaKnown RBP13.59□□□□□ -0.23
HMGN3-201ENST00000275036 ACSS3Q9H6R3 686 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 DNAJC11Q9NVH1 559 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 PLA2G3Q9NZ20 509 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 GPRC5BQ9NZH0 403 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 COPG2Q9UBF2 871 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 COPG1Q9Y678 874 aaKnown RBP13.59□□□□□ -0.23
HMGN3-201ENST00000275036 UBXN8O00124 270 aa13.58□□□□□ -0.24
HMGN3-201ENST00000275036 E2F3O00716 465 aa13.58□□□□□ -0.24
HMGN3-201ENST00000275036 KERAO60938 352 aa13.58□□□□□ -0.24
HMGN3-201ENST00000275036 F10P00742 488 aa13.58□□□□□ -0.24
HMGN3-201ENST00000275036 C2P06681 752 aa13.58□□□□□ -0.24
HMGN3-201ENST00000275036 FHP07954 510 aa13.58□□□□□ -0.24
HMGN3-201ENST00000275036 LTA4HP09960 611 aaKnown RBP13.58□□□□□ -0.24
HMGN3-201ENST00000275036 CTAGE8P0CG41 777 aa13.58□□□□□ -0.24
HMGN3-201ENST00000275036 HNRNPH1P31943 449 aaKnown RBP13.58□□□□□ -0.24
HMGN3-201ENST00000275036 TSFMP43897 325 aaKnown RBP13.58□□□□□ -0.24
HMGN3-201ENST00000275036 AGTR2P50052 363 aa13.58□□□□□ -0.24
HMGN3-201ENST00000275036 DOC2AQ14183 400 aa13.58□□□□□ -0.24
HMGN3-201ENST00000275036 UAP1Q16222 522 aaPredicted RBP13.58□□□□□ -0.24
HMGN3-201ENST00000275036 RIPOR1Q6ZS17 1223 aa13.58□□□□□ -0.24
HMGN3-201ENST00000275036 TBC1D1Q86TI0 1168 aaPredicted RBP13.58□□□□□ -0.24
HMGN3-201ENST00000275036 CTAGE4Q8IX94 777 aa13.58□□□□□ -0.24
HMGN3-201ENST00000275036 PLPP5Q8NEB5 264 aa13.58□□□□□ -0.24
HMGN3-201ENST00000275036 MNS1Q8NEH6 495 aa13.58□□□□□ -0.24
HMGN3-201ENST00000275036 PRR7Q8TB68 274 aa13.58□□□□□ -0.24
HMGN3-201ENST00000275036 STAG3L4Q8TBR4 150 aa13.58□□□□□ -0.24
HMGN3-201ENST00000275036 IFT81Q8WYA0 676 aa13.58□□□□□ -0.24
HMGN3-201ENST00000275036 TBC1D20Q96BZ9 403 aa13.58□□□□□ -0.24
HMGN3-201ENST00000275036 LMF1Q96S06 567 aa13.58□□□□□ -0.24
HMGN3-201ENST00000275036 FUT8Q9BYC5 575 aa13.58□□□□□ -0.24
HMGN3-201ENST00000275036 SLC29A3Q9BZD2 475 aa13.58□□□□□ -0.24
HMGN3-201ENST00000275036 EPS8L2Q9H6S3 715 aa13.58□□□□□ -0.24
HMGN3-201ENST00000275036 CNOT10Q9H9A5 744 aaKnown RBP13.58□□□□□ -0.24
HMGN3-201ENST00000275036 NMRAL1Q9HBL8 299 aa13.58□□□□□ -0.24
HMGN3-201ENST00000275036 SNX15Q9NRS6 342 aa13.58□□□□□ -0.24
HMGN3-201ENST00000275036 MTRF1LQ9UGC7 380 aaKnown RBP13.58□□□□□ -0.24
HMGN3-201ENST00000275036 ERRFI1Q9UJM3 462 aaPredicted RBP13.58□□□□□ -0.24
HMGN3-201ENST00000275036 ZNF490Q9ULM2 529 aaPredicted RBP13.58□□□□□ -0.24
HMGN3-201ENST00000275036 A0A0G2JN53 185 aa13.57□□□□□ -0.24
HMGN3-201ENST00000275036 CCNT2O60583 730 aaKnown RBP13.57□□□□□ -0.24
HMGN3-201ENST00000275036 H2AFYO75367 372 aaKnown RBP13.57□□□□□ -0.24
HMGN3-201ENST00000275036 ACSL3O95573 720 aa13.57□□□□□ -0.24
HMGN3-201ENST00000275036 ALDOAP04075 364 aaKnown RBP13.57□□□□□ -0.24
HMGN3-201ENST00000275036 GP1BBP13224 206 aa13.57□□□□□ -0.24
HMGN3-201ENST00000275036 MTHFD2P13995 350 aa13.57□□□□□ -0.24
HMGN3-201ENST00000275036 ABRAXAS2Q15018 415 aa13.57□□□□□ -0.24
HMGN3-201ENST00000275036 PDK4Q16654 411 aa13.57□□□□□ -0.24
HMGN3-201ENST00000275036 SNX31Q8N9S9 440 aa13.57□□□□□ -0.24
HMGN3-201ENST00000275036 GRHL3Q8TE85 626 aa13.57□□□□□ -0.24
HMGN3-201ENST00000275036 SSC4DQ8WTU2 575 aa13.57□□□□□ -0.24
HMGN3-201ENST00000275036 MS4A6EQ96DS6 147 aa13.57□□□□□ -0.24
HMGN3-201ENST00000275036 WDR34Q96EX3 536 aa13.57□□□□□ -0.24
HMGN3-201ENST00000275036 FMO2Q99518 471 aa13.57□□□□□ -0.24
HMGN3-201ENST00000275036 CAPS2Q9BXY5 557 aa13.57□□□□□ -0.24
HMGN3-201ENST00000275036 CD244Q9BZW8 370 aa13.57□□□□□ -0.24
HMGN3-201ENST00000275036 EHD1Q9H4M9 534 aa13.57□□□□□ -0.24
HMGN3-201ENST00000275036 NT5DC2Q9H857 520 aa13.57□□□□□ -0.24
HMGN3-201ENST00000275036 NUDT4Q9NZJ9 180 aa13.57□□□□□ -0.24
HMGN3-201ENST00000275036 C19orf25Q9UFG5 118 aaPredicted RBP13.57□□□□□ -0.24
HMGN3-201ENST00000275036 ACOT9Q9Y305 439 aa13.57□□□□□ -0.24
HMGN3-201ENST00000275036 DIDO1Q9BTC0 2240 aaKnown RBP13.57□□□□□ -0.24
HMGN3-201ENST00000275036 DOPEY1Q5JWR5 2465 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 A0A087X1B8 175 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 LRIT2A6NDA9 550 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 ANKUB1A6NFN9 424 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 URADA6NGE7 173 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 MAGEB17A8MXT2 336 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 SUPT3HB4E1H0 165 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 FAM227AF5H4B4 570 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 CLGNO14967 610 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 B4GALT2O60909 372 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 SUPT3HO75486 399 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 WFS1O76024 890 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 TUBB4AP04350 444 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 IL10P22301 178 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 PHBP35232 272 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 BTG2P78543 158 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 RUNX2Q13950 521 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 E2F2Q14209 437 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 TLR1Q15399 786 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 NSDHLQ15738 373 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 BTBD16Q32M84 506 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 GLE1Q53GS7 698 aaKnown RBP13.56□□□□□ -0.24
HMGN3-201ENST00000275036 SFT2D3Q587I9 215 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 XKR6Q5GH73 641 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 PLAG1Q6DJT9 500 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 NIPAL1Q6NVV3 410 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 KRT78Q8N1N4 520 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 CA13Q8N1Q1 262 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 PLD6Q8N2A8 252 aaKnown RBP13.56□□□□□ -0.24
HMGN3-201ENST00000275036 TTLQ8NG68 377 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 UBTD2Q8WUN7 234 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 SLC44A1Q8WWI5 657 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 CCT6BQ92526 530 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 GAL3ST3Q96A11 431 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 PTCD3Q96EY7 689 aaKnown RBP13.56□□□□□ -0.24
HMGN3-201ENST00000275036 GPR78Q96P69 363 aa13.56□□□□□ -0.24
HMGN3-201ENST00000275036 NPAS2Q99743 824 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms