RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 ZNF566Q969W8 418 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 DMRTB1Q96MA1 342 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 OR5M11Q96RB7 305 aa12.16□□□□□ -0.46
LIG1-201ENST00000263274 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.15□□□□□ -0.46
LIG1-201ENST00000263274 CLCA1A8K7I4 914 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 H3BM21 787 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 M0R082 166 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 SCAMP2O15127 329 aaKnown RBP12.15□□□□□ -0.46
LIG1-201ENST00000263274 GUCY1B2O75343 617 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 CCNKO75909 580 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 GADD45GO95257 159 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 C1SP09871 688 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 DEFA1P59665 94 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 DEFA3P59666 94 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 KCNJ10P78508 379 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 LEXMQ3ZCV2 418 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 AGAP7PQ5VUJ5 663 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 TMEM220Q6QAJ8 160 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 CFAP206Q8IYR0 622 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 AQP11Q8NBQ7 271 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 KBTBD8Q8NFY9 601 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 ATL1Q8WXF7 558 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 PPCDCQ96CD2 204 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 SORBS1Q9BX66 1292 aaKnown RBP12.15□□□□□ -0.46
LIG1-201ENST00000263274 MMP27Q9H306 513 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 ASIC5Q9NY37 505 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 NAALAD2Q9Y3Q0 740 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 LYVE1Q9Y5Y7 322 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 HSPE1-MOB4S4R3N1 261 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 KIAA0513O60268 411 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 LRG1P02750 347 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 KLK1P06870 262 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 HLA-FP30511 346 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 EIF2DP41214 584 aaKnown RBP12.15□□□□□ -0.46
LIG1-201ENST00000263274 CDC42P60953 191 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 SP3Q02447 781 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 SELENBP1Q13228 472 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 GCNT6Q5T4J0 391 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 C10orf62Q5T681 223 aaPredicted RBP12.15□□□□□ -0.46
LIG1-201ENST00000263274 HSD11B1LQ7Z5J1 315 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 GPR65Q8IYL9 337 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 PARP16Q8N5Y8 322 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 OR52E4Q8NGH9 312 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 CD99L2Q8TCZ2 262 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 FAM129BQ96TA1 746 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 FBXO8Q9NRD0 319 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 NDUFAF4Q9P032 175 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 PCDHGB1Q9Y5G3 927 aa12.15□□□□□ -0.46
LIG1-201ENST00000263274 AGAP5A6NIR3 686 aa12.15□□□□□ -0.47
LIG1-201ENST00000263274 PDZK1P1A8MUH7 402 aa12.15□□□□□ -0.47
LIG1-201ENST00000263274 TGFBR2P37173 567 aa12.15□□□□□ -0.47
LIG1-201ENST00000263274 TAS2R50P59544 299 aa12.15□□□□□ -0.47
LIG1-201ENST00000263274 NDUFA5Q16718 116 aa12.15□□□□□ -0.47
LIG1-201ENST00000263274 SPDYE7PQ495Y7 208 aa12.15□□□□□ -0.47
LIG1-201ENST00000263274 ARSIQ5FYB1 569 aa12.15□□□□□ -0.47
LIG1-201ENST00000263274 ZNF783Q6ZMS7 281 aa12.15□□□□□ -0.47
LIG1-201ENST00000263274 DDX53Q86TM3 631 aaKnown RBP12.15□□□□□ -0.47
LIG1-201ENST00000263274 TMEM25Q86YD3 366 aa12.15□□□□□ -0.47
LIG1-201ENST00000263274 CELF2-AS1Q8N7Q2 184 aa12.15□□□□□ -0.47
LIG1-201ENST00000263274 L3MBTL4Q8NA19 623 aa12.15□□□□□ -0.47
LIG1-201ENST00000263274 TMEM203Q969S6 136 aa12.15□□□□□ -0.47
LIG1-201ENST00000263274 HRASLS5Q96KN8 279 aa12.15□□□□□ -0.47
LIG1-201ENST00000263274 SAMD11Q96NU1 681 aa12.15□□□□□ -0.47
LIG1-201ENST00000263274 VN1R3Q9BXE9 311 aa12.15□□□□□ -0.47
LIG1-201ENST00000263274 SNTG1Q9NSN8 517 aa12.15□□□□□ -0.47
LIG1-201ENST00000263274 DNAJC27Q9NZQ0 273 aa12.15□□□□□ -0.47
LIG1-201ENST00000263274 INSL5Q9Y5Q6 135 aa12.15□□□□□ -0.47
LIG1-201ENST00000263274 KCNE1BA0A087WTH5 132 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 EFCAB10A6NFE3 127 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 TAF4O00268 1085 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 KPNA3O00505 521 aaPredicted RBP12.14□□□□□ -0.47
LIG1-201ENST00000263274 OR10H3O60404 316 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 RFPL2O75678 378 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 APOL3O95236 402 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 POP4O95707 220 aaKnown RBP12.14□□□□□ -0.47
LIG1-201ENST00000263274 PSMA3P25788 255 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 GGT2P36268 569 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 AP1S2P56377 157 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 SELENOWP63302 87 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 CDK6Q00534 326 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 SLBPQ14493 270 aaKnown RBP eCLIP12.14□□□□□ -0.47
LIG1-201ENST00000263274 ZNF385BQ569K4 471 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 ANXA8L1Q5VT79 327 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 DEF8Q6ZN54 512 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 CHCHD4Q8N4Q1 142 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 DNAJC22Q8N4W6 341 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 B3GNT7Q8NFL0 401 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 OVCA2Q8WZ82 227 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 RAB8BQ92930 207 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 NEIL2Q969S2 332 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 OTUB1Q96FW1 271 aaPredicted RBP12.14□□□□□ -0.47
LIG1-201ENST00000263274 ANKMY1Q9P2S6 941 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 DNMT3BQ9UBC3 853 aaKnown RBP12.14□□□□□ -0.47
LIG1-201ENST00000263274 PSORS1C1Q9UIG5 152 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 A0A0G2JN53 185 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 SCN2BO60939 215 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 ADORA3P0DMS8 318 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 TNNI3P19429 210 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 ASMTP46597 345 aa12.14□□□□□ -0.47
LIG1-201ENST00000263274 SLC6A12P48065 614 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms