RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 LIMK1P53667 647 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 LRIT3Q3SXY7 679 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 TPRG1Q6ZUI0 275 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 METTL4Q8N3J2 472 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 IQCF1Q8N6M8 205 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 OR2A12Q8NGT7 310 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 HRASLS5Q96KN8 279 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 LMLNQ96KR4 655 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 RDH14Q9HBH5 336 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 SGK2Q9HBY8 427 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 PSORS1C1Q9UIG5 152 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 SAMD4AQ9UPU9 718 aaKnown RBP10.26□□□□□ -0.77
USP28-201ENST00000003302 IGLV3-16A0A075B6K0 115 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 NEDD8-MDP1E9PL57 170 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 HYAL3O43820 417 aaPredicted RBP10.26□□□□□ -0.77
USP28-201ENST00000003302 KDM1AO60341 852 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 CLK1P49759 484 aaKnown RBP10.26□□□□□ -0.77
USP28-201ENST00000003302 AP1S1P61966 158 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 NTHL1P78549 312 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 INSL4Q14641 139 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 PROX2Q3B8N5 592 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 AGTRAPQ6RW13 159 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 ECHDC3Q96DC8 303 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 C2orf49Q9BVC5 232 aaPredicted RBP10.26□□□□□ -0.77
USP28-201ENST00000003302 ASIC5Q9NY37 505 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 INSL5Q9Y5Q6 135 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 ARID1BQ8NFD5 2236 aaPredicted RBP10.26□□□□□ -0.77
USP28-201ENST00000003302 SDK1Q7Z5N4 2213 aa10.26□□□□□ -0.77
USP28-201ENST00000003302 JUPP14923 745 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 RACK1P63244 317 aaKnown RBP10.25□□□□□ -0.77
USP28-201ENST00000003302 KEAP1Q14145 624 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 ACOX1Q15067 660 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 SPOUT1Q5T280 376 aaKnown RBP10.25□□□□□ -0.77
USP28-201ENST00000003302 C1QTNF12Q5T7M4 302 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 ATAD3BQ5T9A4 648 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 PRSS48Q7RTY5 328 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 GLCCI1Q86VQ1 547 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 ZNF675Q8TD23 568 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 ATL1Q8WXF7 558 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 BEX2Q9BXY8 128 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 GABARAPL1Q9H0R8 117 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 C11orf16Q9NQ32 467 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 DNAJC11Q9NVH1 559 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 SPATA6Q9NWH7 488 aaPredicted RBP10.25□□□□□ -0.77
USP28-201ENST00000003302 B3GNT3Q9Y2A9 372 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 TRBV4-1A0A0J9YWV2 114 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 EVPLLA8MZ36 301 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 KMOO15229 486 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 SLC22A1O15245 554 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 COQ9O75208 318 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 LEFTY1O75610 366 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 GPX5O75715 221 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 CD79BP40259 229 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 TUFMP49411 452 aaKnown RBP10.25□□□□□ -0.77
USP28-201ENST00000003302 ZC3H12BQ5HYM0 836 aaKnown RBP10.25□□□□□ -0.77
USP28-201ENST00000003302 C22orf39Q6P5X5 142 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 NLRP8Q86W28 1048 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 PLD3Q8IV08 490 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 PCDHB11Q9Y5F2 797 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 ORC6Q9Y5N6 252 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 SCAMP2O15127 329 aaKnown RBP10.25□□□□□ -0.77
USP28-201ENST00000003302 INHAP05111 366 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 ALOX12P18054 663 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 CAV3P56539 151 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 SPIBQ01892 262 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 MXD1Q05195 221 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 MED22Q15528 200 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 TCEA2Q15560 299 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 AGAP7PQ5VUJ5 663 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 PLSCR3Q9NRY6 295 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 NPIPB8E9PQR5 432 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 TNFRSF11BO00300 401 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 SCAMP1O15126 338 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 PFDN6O15212 129 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 HOXB3P14651 431 aaPredicted RBP10.25□□□□□ -0.77
USP28-201ENST00000003302 HTRA3P83110 453 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 ACSM2AQ08AH3 577 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 PTGES3Q15185 160 aaKnown RBP10.25□□□□□ -0.77
USP28-201ENST00000003302 TTLL9Q3SXZ7 439 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 ARMCX4Q5H9R4 360 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 ACSM2BQ68CK6 577 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 LGI4Q8N135 537 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 HJURPQ8NCD3 748 aaPredicted RBP10.25□□□□□ -0.77
USP28-201ENST00000003302 C7orf57Q8NEG2 295 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 OR10G2Q8NGC3 310 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 TMEM203Q969S6 136 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 CORO1BQ9BR76 489 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 NECTIN3Q9NQS3 549 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 TM7SF3Q9NS93 570 aa10.25□□□□□ -0.77
USP28-201ENST00000003302 DLGAP3O95886 979 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 PPP3CCP48454 512 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 MAD2L1Q13257 205 aaPredicted RBP10.24□□□□□ -0.77
USP28-201ENST00000003302 ZNF404Q494X3 552 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 ARSIQ5FYB1 569 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 UBE2UQ5VVX9 321 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 TNFAIP8L2Q6P589 184 aaPredicted RBP10.24□□□□□ -0.77
USP28-201ENST00000003302 ATCAYQ86WG3 371 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 SYT14Q8NB59 555 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 VN1R2Q8NFZ6 395 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 OR4A15Q8NGL6 344 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms