RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 ZNF302Q9NR11 478 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 SPHK1Q9NYA1 384 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 MRPS2Q9Y399 296 aaKnown RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 IQCMA0A1B0GVH7 501 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 CXorf65A6NEN9 183 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 ARL5CA6NH57 179 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 C5orf58C9J3I9 102 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 SIAH2O43255 324 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 CHST10O43529 356 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 GNG7O60262 68 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PLIN3O60664 434 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 SERPINA6P08185 405 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PFKFB1P16118 471 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 DTYMKP23919 212 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 RPS12P25398 132 aaKnown RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 HEPACAMQ14CZ8 416 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 IQCCQ4KMZ1 466 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 EFHC2Q5JST6 749 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 LRP11Q86VZ4 500 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PNMA5Q96PV4 448 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 CDK19Q9BWU1 502 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 ANKHQ9HCJ1 492 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 ENY2Q9NPA8 101 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 ASCL3Q9NQ33 180 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 STOX2Q9P2F5 926 aaPredicted RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 DHRS7Q9Y394 339 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 BOLA1Q9Y3E2 137 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 UBE2Q2LH0YL09 131 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PEX10O60683 326 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 ANXA1P04083 346 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 RPLP1P05386 114 aaKnown RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 CHRNGP07510 517 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PFKLP17858 780 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PTPREP23469 700 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 ADRA1BP35368 520 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 FMO5P49326 533 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 CDH8P55286 799 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 RCAN2Q14206 197 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 GPNMBQ14956 572 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PDK4Q16654 411 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 DOK6Q6PKX4 331 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 USP45Q70EL2 814 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 GPR180Q86V85 440 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 GATSQ8NAP1 163 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 POGLUT1Q8NBL1 392 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 OR52M1Q8NGK5 317 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 SLCO2A1Q92959 643 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 FOXN4Q96NZ1 517 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 ATP6V0BQ99437 205 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PCDHAC1Q9H158 963 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 C2orf40Q9H1Z8 148 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PCDHA4Q9UN74 947 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PCDHA13Q9Y5I0 950 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 A0A0A6YYK5 440 aaPredicted RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 BCAS1O75363 584 aaPredicted RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 RPP40O75818 363 aaKnown RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 TACR3P29371 465 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 NUDT1P36639 197 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 MRPL19P49406 292 aaKnown RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 NKX6-1P78426 367 aaPredicted RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PTPRRQ15256 657 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PSMD5Q16401 504 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 LEMD1Q68G75 181 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 OR52E8Q6IFG1 317 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 Q6ZNX1 250 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 APH1AQ96BI3 265 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 ORAI1Q96D31 301 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 KTI12Q96EK9 354 aaPredicted RBP3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PGM2Q96G03 612 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 TUBB6Q9BUF5 446 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 PDLIM7Q9NR12 457 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 LIPGQ9Y5X9 500 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 DOCK4Q8N1I0 1966 aa3.46□□□□□ -1.86
SCN1A-221ENST00000641996 OR5K4A6NMS3 321 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 CCNE2O96020 404 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 SP2Q02086 613 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 IGF2-ASQ6U949 168 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 C17orf99Q6UX52 265 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 CPOQ8IVL8 374 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 MCOLN2Q8IZK6 566 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 FBXO39Q8N4B4 442 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 IL17RCQ8NAC3 791 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 OR6K3Q8NGY3 331 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 DYRK2Q92630 601 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 BDH2Q9BUT1 245 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF350Q9GZX5 532 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 TAS2R14Q9NYV8 317 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 PISDQ9UG56 409 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 GPR179Q6PRD1 2367 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 SOGA1O94964 1423 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 CACNG3O60359 315 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 SCGB1D1O95968 90 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 RLN2P04090 185 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 CXCR2P25025 360 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 LAP3P28838 519 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 RGRP47804 291 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 CD300CQ08708 224 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 BTBD8Q5XKL5 378 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 RTL4Q6ZR62 310 aa3.45□□□□□ -1.86
SCN1A-221ENST00000641996 RIOX2Q8IUF8 465 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms