RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 ERN1O75460 977 aaKnown RBP16.1■□□□□ 0.17
CLN3-252ENST00000636907 GSTM2P28161 218 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 CDKN2CP42773 168 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 GSK3BP49841 420 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 EEFSECP57772 596 aaKnown RBP16.1■□□□□ 0.17
CLN3-252ENST00000636907 MTPNP58546 118 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 MC1RQ01726 317 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 LIPEQ05469 1076 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 C2orf80Q0P641 193 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 HYAL2Q12891 473 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 TRAP1Q12931 704 aaKnown RBP16.1■□□□□ 0.17
CLN3-252ENST00000636907 SPATS1Q496A3 300 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 CHCHD2P9Q5T1J5 151 aaPredicted RBP16.1■□□□□ 0.17
CLN3-252ENST00000636907 CCNYL2Q5T2Q4 361 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 LRIF1Q5T3J3 769 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 CPTPQ5TA50 214 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 PAGE2Q7Z2X7 111 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 CAMKMTQ7Z624 323 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 ARL14Q8N4G2 192 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 MIEF2Q96C03 454 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 ANKRD27Q96NW4 1050 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 CENPKQ9BS16 269 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 KLHL31Q9H511 634 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 ALG2Q9H553 416 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 REEP4Q9H6H4 257 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 EVA1BQ9NVM1 165 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.1■□□□□ 0.17
CLN3-252ENST00000636907 ATP6V1HQ9UI12 483 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 PCDHB14Q9Y5E9 798 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 THADAQ6YHU6 1953 aa16.1■□□□□ 0.17
CLN3-252ENST00000636907 VCANP13611 3396 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 A0A1B0GVT2 93 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 OR5K3A6NET4 321 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 PPM1DO15297 605 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 CAPN5O15484 640 aaPredicted RBP16.09■□□□□ 0.17
CLN3-252ENST00000636907 TNFSF14O43557 240 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 NOBOXO60393 691 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 IL3P08700 152 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 HOXB9P17482 250 aaPredicted RBP16.09■□□□□ 0.17
CLN3-252ENST00000636907 PTPN6P29350 595 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 LSSP48449 732 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 DHPSP49366 369 aaPredicted RBP16.09■□□□□ 0.17
CLN3-252ENST00000636907 SLC5A12Q1EHB4 618 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 DEFB133Q30KQ1 61 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 ADPRMQ3LIE5 342 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 ZNF385BQ569K4 471 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 RUNDC3AQ59EK9 446 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 TJAP1Q5JTD0 557 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 FCRL6Q6DN72 434 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 AAGABQ6PD74 315 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 SPESP1Q6UW49 350 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 NUDT13Q86X67 352 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 MAML2Q8IZL2 1156 aaPredicted RBP16.09■□□□□ 0.17
CLN3-252ENST00000636907 TRPV3Q8NET8 790 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 OR8J3Q8NGG0 315 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 DNAJB8Q8NHS0 232 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 RSC1A1Q92681 617 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 COQ8BQ96D53 544 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 FCRL4Q96PJ5 515 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 UCKL1Q9NWZ5 548 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 FAM120CQ9NX05 1096 aaKnown RBP16.09■□□□□ 0.17
CLN3-252ENST00000636907 SH3BP4Q9P0V3 963 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 STX18Q9P2W9 335 aaKnown RBP16.09■□□□□ 0.17
CLN3-252ENST00000636907 BCAP29Q9UHQ4 241 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 PCDHGA2Q9Y5H1 932 aa16.09■□□□□ 0.17
CLN3-252ENST00000636907 TP53BP1Q12888 1972 aaPredicted RBP16.09■□□□□ 0.17
CLN3-252ENST00000636907 LMO7DNF2Z398 122 aa16.08■□□□□ 0.17
CLN3-252ENST00000636907 PIAS2O75928 621 aa16.08■□□□□ 0.17
CLN3-252ENST00000636907 GSNP06396 782 aa16.08■□□□□ 0.17
CLN3-252ENST00000636907 FURINP09958 794 aa16.08■□□□□ 0.17
CLN3-252ENST00000636907 FASLGP48023 281 aa16.08■□□□□ 0.17
CLN3-252ENST00000636907 PLA2G16P53816 162 aa16.08■□□□□ 0.17
CLN3-252ENST00000636907 PPP1CAP62136 330 aa16.08■□□□□ 0.17
CLN3-252ENST00000636907 RPS15AP62244 130 aaKnown RBP16.08■□□□□ 0.17
CLN3-252ENST00000636907 AP2B1P63010 937 aa16.08■□□□□ 0.17
CLN3-252ENST00000636907 CSTF1Q05048 431 aaKnown RBP16.08■□□□□ 0.17
CLN3-252ENST00000636907 PDE7AQ13946 482 aa16.08■□□□□ 0.17
CLN3-252ENST00000636907 DUOXA1Q1HG43 343 aa16.08■□□□□ 0.17
CLN3-252ENST00000636907 TMEM35AQ53FP2 167 aa16.08■□□□□ 0.17
CLN3-252ENST00000636907 LYSMD4Q5XG99 296 aa16.08■□□□□ 0.17
CLN3-252ENST00000636907 PMS2CLQ68D20 193 aa16.08■□□□□ 0.17
CLN3-252ENST00000636907 OR4C11Q6IEV9 310 aa16.08■□□□□ 0.17
CLN3-252ENST00000636907 FBXO42Q6P3S6 717 aa16.08■□□□□ 0.17
CLN3-252ENST00000636907 FIGLAQ6QHK4 219 aa16.08■□□□□ 0.17
CLN3-252ENST00000636907 VN1R4Q7Z5H5 301 aa16.08■□□□□ 0.17
CLN3-252ENST00000636907 IFNEQ86WN2 208 aa16.08■□□□□ 0.17
CLN3-252ENST00000636907 OOSP2Q86WS3 158 aa16.08■□□□□ 0.17
CLN3-252ENST00000636907 CLECL1Q8IZS7 167 aa16.08■□□□□ 0.17
CLN3-252ENST00000636907 AMER3Q8N944 861 aa16.08■□□□□ 0.17
CLN3-252ENST00000636907 MS4A6EQ96DS6 147 aa16.08■□□□□ 0.17
CLN3-252ENST00000636907 QRFPRQ96P65 431 aa16.08■□□□□ 0.17
CLN3-252ENST00000636907 PRPF18Q99633 342 aaKnown RBP16.08■□□□□ 0.17
CLN3-252ENST00000636907 KCTD14Q9BQ13 255 aaPredicted RBP16.08■□□□□ 0.17
CLN3-252ENST00000636907 KLHL25Q9H0H3 589 aa16.08■□□□□ 0.17
CLN3-252ENST00000636907 IKZF5Q9H5V7 419 aa16.08■□□□□ 0.17
CLN3-252ENST00000636907 ADAM29Q9UKF5 820 aa16.08■□□□□ 0.17
CLN3-252ENST00000636907 USP22Q9UPT9 525 aa16.08■□□□□ 0.17
CLN3-252ENST00000636907 TECTAO75443 2155 aa16.08■□□□□ 0.16
CLN3-252ENST00000636907 A0A0G2JN53 185 aa16.08■□□□□ 0.16
CLN3-252ENST00000636907 ARHGAP10A1A4S6 786 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms