RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 SYNPOQ8N3V7 929 aa5.39□□□□□ -1.55
SCN1A-209ENST00000635750 DDIT4LQ96D03 193 aa5.39□□□□□ -1.55
SCN1A-209ENST00000635750 MALSU1Q96EH3 234 aa5.39□□□□□ -1.55
SCN1A-209ENST00000635750 CENPNQ96H22 339 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-209ENST00000635750 TMEM175Q9BSA9 504 aa5.39□□□□□ -1.55
SCN1A-209ENST00000635750 FXYD6Q9H0Q3 95 aa5.39□□□□□ -1.55
SCN1A-209ENST00000635750 RGCCQ9H4X1 137 aa5.39□□□□□ -1.55
SCN1A-209ENST00000635750 LRRC4CQ9HCJ2 640 aa5.39□□□□□ -1.55
SCN1A-209ENST00000635750 EIF2B4Q9UI10 523 aaKnown RBP5.39□□□□□ -1.55
SCN1A-209ENST00000635750 ACAD8Q9UKU7 415 aa5.39□□□□□ -1.55
SCN1A-209ENST00000635750 TP53TG5Q9Y2B4 290 aa5.39□□□□□ -1.55
SCN1A-209ENST00000635750 PLLPQ9Y342 182 aa5.39□□□□□ -1.55
SCN1A-209ENST00000635750 TMED5Q9Y3A6 229 aa5.39□□□□□ -1.55
SCN1A-209ENST00000635750 GRXCR1A8MXD5 290 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 VILLO15195 856 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 HCRTR2O43614 444 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 BPGMP07738 259 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 AMY2BP19961 511 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 SHMT2P34897 504 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 LEPRP48357 1165 aaKnown RBP5.38□□□□□ -1.55
SCN1A-209ENST00000635750 TOB1P50616 345 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-209ENST00000635750 OR4D2P58180 307 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 RSU1Q15404 277 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 ODF4Q2M2E3 257 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 TMEM201Q5SNT2 666 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 NSMAFQ92636 917 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 PCDHGA8Q9Y5G5 932 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 DLC1Q96QB1 1528 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 SNCGO76070 127 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 CD63P08962 238 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 PABPC4LP0CB38 370 aaKnown RBP5.38□□□□□ -1.55
SCN1A-209ENST00000635750 FOSL1P15407 271 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 MAGEA11P43364 429 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 MPP1Q00013 466 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 CLEC17AQ6ZS10 378 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 SPATC1Q76KD6 591 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 OR5K1Q8NHB7 308 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 FANK1Q8TC84 345 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 FUBP3Q96I24 572 aaKnown RBP eCLIP5.38□□□□□ -1.55
SCN1A-209ENST00000635750 OR8D2Q9GZM6 311 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 ATG5Q9H1Y0 275 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 ACSS3Q9H6R3 686 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 C19orf12Q9NSK7 152 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 UBIAD1Q9Y5Z9 338 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 RNF215Q9Y6U7 377 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 NCANO14594 1321 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 SSX4O60224 188 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 APBB3O95704 486 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 OAS1P00973 400 aaKnown RBP5.38□□□□□ -1.55
SCN1A-209ENST00000635750 BCHEP06276 602 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 C2P06681 752 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 AZGP1P25311 298 aaKnown RBP5.38□□□□□ -1.55
SCN1A-209ENST00000635750 PTGS2P35354 604 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 ITPRIPL2Q3MIP1 535 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 APOBEC3HQ6NTF7 200 aaKnown RBP5.38□□□□□ -1.55
SCN1A-209ENST00000635750 RNF111Q6ZNA4 994 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 CMC1Q7Z7K0 106 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 LDB1Q86U70 411 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-209ENST00000635750 CILP2Q8IUL8 1156 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 ZNF584Q8IVC4 421 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 C12orf45Q8N5I9 185 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-209ENST00000635750 RHBDF1Q96CC6 855 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 PGAP3Q96FM1 320 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-209ENST00000635750 SH3YL1Q96HL8 342 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-209ENST00000635750 ZNF578Q96N58 590 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-209ENST00000635750 EIF5A2Q9GZV4 153 aaKnown RBP5.38□□□□□ -1.55
SCN1A-209ENST00000635750 COPZ2Q9P299 210 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 FBXL3Q9UKT7 428 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 FZD4Q9ULV1 537 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 CYP8B1Q9UNU6 501 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 DHDHQ9UQ10 334 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 A0A0G2JN53 185 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 SMIM28A0A1B0GU29 152 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 UPK3BL1B0FP48 263 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 UPK3BL2E5RIL1 263 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 ADAMTS4O75173 837 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 PSMD10O75832 226 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 SOX30O94993 753 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 OR4F21O95013 312 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 SCAF4O95104 1147 aaKnown RBP5.38□□□□□ -1.55
SCN1A-209ENST00000635750 PRLP01236 227 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 IL3P08700 152 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 RAP2AP10114 183 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 RIPPLY1Q0D2K3 151 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 WSCD2Q2TBF2 565 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 C2orf76Q3KRA6 126 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 TSTD2Q5T7W7 516 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 TMEM53Q6P2H8 277 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 PRSS55Q6UWB4 352 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-209ENST00000635750 CEACAM20Q6UY09 585 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 ZNF598Q86UK7 904 aaKnown RBP5.38□□□□□ -1.55
SCN1A-209ENST00000635750 TPRA1Q86W33 373 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 ARL14Q8N4G2 192 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 GOLM1Q8NBJ4 401 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 PROKR1Q8TCW9 393 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 PSMG2Q969U7 264 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 SPTSSAQ969W0 71 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 CIB1Q99828 191 aa5.38□□□□□ -1.55
SCN1A-209ENST00000635750 POLDIP3Q9BY77 421 aaKnown RBP5.38□□□□□ -1.55
SCN1A-209ENST00000635750 USP29Q9HBJ7 922 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms