RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-218	ENST00000625299	B3GALT4	O96024	378 aa		13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	SERPIND1	P05546	499 aa		13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	IL10	P22301	178 aa		13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	JAK1	P23458	1154 aa		13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	TRHR	P34981	398 aa	Predicted RBP	13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	RPL22	P35268	128 aa	Known RBP	13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	GRK3	P35626	688 aa		13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	NPY2R	P49146	381 aa		13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	NR0B1	P51843	470 aa	Known RBP	13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	TERF1	P54274	439 aa		13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	ADAR	P55265	1226 aa	Known RBP	13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	MPP1	Q00013	466 aa		13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	HYAL2	Q12891	473 aa		13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	FOXD4	Q12950	439 aa	Predicted RBP	13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	DEFB134	Q4QY38	66 aa		13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	SEL1L2	Q5TEA6	688 aa		13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	UBE2R2	Q712K3	238 aa	Predicted RBP	13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	TMEM156	Q8N614	296 aa		13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	FBXO15	Q8NCQ5	510 aa	Predicted RBP	13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	ASB11	Q8WXH4	323 aa		13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	TM4SF19	Q96DZ7	209 aa		13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	PWWP2A	Q96N64	755 aa		13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	TCF12	Q99081	682 aa		13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	POLDIP3	Q9BY77	421 aa	Known RBP	13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	LIME1	Q9H400	295 aa		13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	TRIM45	Q9H8W5	580 aa	Predicted RBP	13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	EIF2B3	Q9NR50	452 aa	Known RBP	13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	DRG1	Q9Y295	367 aa	Known RBP	13.73	□□□□□ -0.21
PNKP-218	ENST00000625299	TRBV11-1	A0A0K0K1C0	115 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299		A0A1B0GTL3	188 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	FAM237B	A0A1B0GVD1	139 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	CTAGE9	A4FU28	777 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	SAGE2P	A6NJ88	616 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	NDUFS4	O43181	175 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	CHST10	O43529	356 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	KLK8	O60259	260 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	FAM155B	O75949	473 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	MPC1L	P0DKB6	136 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	CDH1	P12830	882 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	OGN	P20774	298 aa	Known RBP	13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	MAOA	P21397	527 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	SKIV2L2	P42285	1042 aa	Known RBP	13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	BTG2	P78543	158 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	HERC3	Q15034	1050 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	EMC4	Q5J8M3	183 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	ACAD11	Q709F0	780 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	CENPU	Q71F23	418 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	PIWIL4	Q7Z3Z4	852 aa	Known RBP	13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	MDGA2	Q7Z553	956 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	C17orf64	Q86WR6	236 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	ZZZ3	Q8IYH5	903 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	ZNF740	Q8NDX6	193 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	OR5M9	Q8NGP3	310 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	C16orf52	Q8NHV5	167 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	NINJ1	Q92982	152 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	KIFC1	Q9BW19	673 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	FRMD8P1	Q9BZ68	369 aa	Predicted RBP	13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	TRIM5	Q9C035	493 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	SLC6A16	Q9GZN6	736 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	ATG10	Q9H0Y0	220 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	CCDC68	Q9H2F9	335 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	SLC24A3	Q9HC58	644 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	FBXW2	Q9UKT8	454 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	PLEKHA6	Q9Y2H5	1048 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	SLC22A7	Q9Y694	548 aa		13.72	□□□□□ -0.21
PNKP-218	ENST00000625299	TMEM200C	A6NKL6	621 aa		13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	FAM166B	A8MTA8	275 aa		13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	GFY	I3L273	518 aa		13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	AP3B1	O00203	1094 aa		13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	ZNF888	P0CJ79	500 aa	Predicted RBP	13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	MEF2A	Q02078	507 aa	Predicted RBP	13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	PLGLB1	Q02325	96 aa		13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	SNTB1	Q13884	538 aa	Known RBP	13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	RPS6KA1	Q15418	735 aa		13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	KCTD19	Q17RG1	926 aa	Predicted RBP	13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	ZNF470	Q6ECI4	717 aa		13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	KIAA0930	Q6ICG6	404 aa	Predicted RBP	13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	ZNF585A	Q6P3V2	769 aa		13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	CASC4	Q6P4E1	433 aa		13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	PAOX	Q6QHF9	649 aa		13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	RAD9B	Q6WBX8	426 aa		13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	MBOAT1	Q6ZNC8	495 aa		13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	CILP2	Q8IUL8	1156 aa		13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	CPNE9	Q8IYJ1	553 aa		13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	ZFP62	Q8NB50	900 aa	Predicted RBP	13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	MFSD9	Q8NBP5	474 aa		13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	RMND5B	Q96G75	393 aa	Predicted RBP	13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	GPATCH1	Q9BRR8	931 aa	Known RBP	13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	PCBD2	Q9H0N5	130 aa		13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	RHBG	Q9H310	441 aa		13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	TSPY26P	Q9H489	355 aa		13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	FBXO6	Q9NRD1	293 aa	Predicted RBP	13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	PNPLA3	Q9NST1	481 aa		13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	ST6GALNAC2	Q9UJ37	374 aa		13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	SOX13	Q9UN79	622 aa		13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	VPS9D1	Q9Y2B5	631 aa		13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	L3MBTL1	Q9Y468	752 aa		13.71	□□□□□ -0.21
PNKP-218	ENST00000625299	FLNA	P21333	2647 aa	Known RBP	13.71	□□□□□ -0.22
PNKP-218	ENST00000625299	SLC16A5	O15375	505 aa		13.7	□□□□□ -0.22

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