RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 FCGR1AP12314 374 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 OLR1P78380 273 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 DUOXA1Q1HG43 343 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 DPY19L1Q2PZI1 675 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 RRM2BQ7LG56 351 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 PIGKQ92643 395 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 SLC47A1Q96FL8 570 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 PCDHB14Q9Y5E9 798 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 EP300Q09472 2414 aaPredicted RBP15.07■□□□□ 0
CPSF1-213ENST00000620219 PDPK1O15530 556 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 PRKD3O94806 890 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 IFNA16P05015 189 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 UQCRBP14927 111 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 PPP2R1BP30154 601 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 KIAA1958Q8N8K9 716 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 L3MBTL4Q8NA19 623 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 TP53I13Q8NBR0 393 aaPredicted RBP15.07■□□□□ 0
CPSF1-213ENST00000620219 ANKRD27Q96NW4 1050 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 BRINP2Q9C0B6 783 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 TCEAL2Q9H3H9 227 aaPredicted RBP15.07■□□□□ 0
CPSF1-213ENST00000620219 TMEM181Q9P2C4 612 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 HCN2Q9UL51 889 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 MAPRE3Q9UPY8 281 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 CYP7B1O75881 506 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 CPN2P22792 545 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 POU1F1P28069 291 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 RPS26P62854 115 aaKnown RBP15.07■□□□□ 0
CPSF1-213ENST00000620219 GPAT3Q53EU6 434 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 SRFBP1Q8NEF9 429 aaKnown RBP15.07■□□□□ 0
CPSF1-213ENST00000620219 C19orf43Q9BQ61 176 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 SPNS1Q9H2V7 528 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 SLC2A4RGQ9NR83 387 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 UTS2RQ9UKP6 389 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 DOCK9Q9BZ29 2069 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 APBB3O95704 486 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 CLIC3O95833 236 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 F3P13726 295 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 VSX2P58304 361 aaPredicted RBP15.07■□□□□ 0
CPSF1-213ENST00000620219 CYP27C1Q4G0S4 372 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 PROSER1Q86XN7 944 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 EZH1Q92800 747 aaPredicted RBP15.07■□□□□ 0
CPSF1-213ENST00000620219 CIDECQ96AQ7 238 aaPredicted RBP15.07■□□□□ 0
CPSF1-213ENST00000620219 TEX101Q9BY14 249 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 REEP4Q9H6H4 257 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 ZCCHC3Q9NUD5 404 aaKnown RBP15.07■□□□□ 0
CPSF1-213ENST00000620219 TAAR2Q9P1P5 351 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 OAZ3Q9UMX2 235 aa15.07■□□□□ 0
CPSF1-213ENST00000620219 DNMT3AQ9Y6K1 912 aaPredicted RBP15.07■□□□□ 0
CPSF1-213ENST00000620219 NCBP2P52298 156 aaKnown RBP eCLIP15.06■□□□□ 05e-6■■■□□ 15.2
CPSF1-213ENST00000620219 EEFSECP57772 596 aaKnown RBP15.06■□□□□ 0
CPSF1-213ENST00000620219 ZDHHC1Q8WTX9 485 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 RAB8BQ92930 207 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 TMEM125Q96AQ2 219 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 STARD5Q9NSY2 213 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 DDX18Q9NVP1 670 aaKnown RBP15.06■□□□□ 0
CPSF1-213ENST00000620219 SPHK1Q9NYA1 384 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 NFKBIL1Q9UBC1 381 aaPredicted RBP15.06■□□□□ 0
CPSF1-213ENST00000620219 SIT1Q9Y3P8 196 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 SLC28A2O43868 658 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 OR10H2O60403 315 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 PAPLNO95428 1278 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 DDX59Q5T1V6 619 aaKnown RBP eCLIP15.06■□□□□ 02e-7■■■■■ 37.4
CPSF1-213ENST00000620219 METTL2BQ6P1Q9 378 aaKnown RBP15.06■□□□□ 0
CPSF1-213ENST00000620219 LPCAT2Q7L5N7 544 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 ZNF551Q7Z340 670 aaPredicted RBP15.06■□□□□ 0
CPSF1-213ENST00000620219 HMGN2P46Q86SG4 172 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 SLC9A6Q92581 669 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 GABRG3Q99928 467 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 SOX17Q9H6I2 414 aaPredicted RBP15.06■□□□□ 0
CPSF1-213ENST00000620219 DPPA5A6NC42 116 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 H3BNX3 289 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 FXYD1O00168 92 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 ETHE1O95571 254 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 KRT75O95678 551 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 IL1RNP18510 177 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 GRIK2Q13002 908 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 KHDRBS2Q5VWX1 349 aaKnown RBP15.06■□□□□ 0
CPSF1-213ENST00000620219 LCTLQ6UWM7 567 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 FAM92BQ6ZTR7 304 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 OR4N5Q8IXE1 308 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 MICU2Q8IYU8 434 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 MINDY1Q8N5J2 469 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 GMEB2Q9UKD1 530 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 CACNA1EQ15878 2313 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 CAPN5O15484 640 aaPredicted RBP15.06■□□□□ 0
CPSF1-213ENST00000620219 HNRNPRO43390 633 aaKnown RBP15.06■□□□□ 0
CPSF1-213ENST00000620219 JAK1P23458 1154 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 CD38P28907 300 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 SLC7A1P30825 629 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 PRDX1Q06830 199 aaKnown RBP15.06■□□□□ 0
CPSF1-213ENST00000620219 RNF220Q5VTB9 566 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 SLC9B2Q86UD5 537 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 CCDC116Q8IYX3 515 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 KCT2Q8NC54 265 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 CPNE7Q9UBL6 633 aa15.06■□□□□ 0
CPSF1-213ENST00000620219 ACOT8O14734 319 aa15.05■□□□□ 0
CPSF1-213ENST00000620219 UGDHO60701 494 aa15.05■□□□□ 0
CPSF1-213ENST00000620219 CDC123O75794 336 aaPredicted RBP15.05■□□□□ 0
CPSF1-213ENST00000620219 LYNP07948 512 aa15.05■□□□□ 0
CPSF1-213ENST00000620219 CD22P20273 847 aa15.05■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms