RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 NME4O00746 187 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 GRID2O43424 1007 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 FDXRP22570 491 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 IL12BP29460 328 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 HMGCLP35914 325 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 IST1P53990 364 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 SLC3A1Q07837 685 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 LINC00471Q8N535 108 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 FAM46DQ8NEK8 389 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 IGSF21Q96ID5 467 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 RANBP9Q96S59 729 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 MND1Q9BWT6 205 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 TIGARQ9NQ88 270 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 C2orf92A0A1B0GVN3 265 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 UNCXA6NJT0 531 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 CCDC85CA6NKD9 419 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 K7ERQ8 282 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 LEFTY1O75610 366 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 UBXN7O94888 489 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 PTNP21246 168 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 RPP38P78345 283 aaKnown RBP13.53□□□□□ -0.24
CPSF1-212ENST00000616140 VLDLRP98155 873 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 CGB2Q6NT52 195 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 ZFAND4Q86XD8 727 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 C7orf57Q8NEG2 295 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 OR4E2Q8NGC2 313 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 FBXL12Q9NXK8 326 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 TAS2R9Q9NYW1 312 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 WDR45Q9Y484 360 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 ZNF840PA6NDX5 716 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 TMEM150CB9EJG8 249 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 SOCS2O14508 198 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 EDIL3O43854 480 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 PRMT3O60678 531 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 STC2O76061 302 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 RCBTB2O95199 551 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 GDI1P31150 447 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 TMBIM6P55061 237 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 PRMT2P55345 433 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 PUDPQ08623 228 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 FAM129BQ96TA1 746 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 KXD1Q9BQD3 176 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 MGME1Q9BQP7 344 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 ZDHHC4Q9NPG8 344 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 UCKL1Q9NWZ5 548 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 MYO7AQ13402 2215 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 DENRO43583 198 aaKnown RBP13.53□□□□□ -0.24
CPSF1-212ENST00000616140 EEDO75530 441 aaKnown RBP13.53□□□□□ -0.24
CPSF1-212ENST00000616140 LDOC1O95751 146 aaPredicted RBP13.53□□□□□ -0.24
CPSF1-212ENST00000616140 SERPINA3P01011 423 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 CSF2P04141 144 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 CAPN3P20807 821 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 IL4RP24394 825 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 HLCSP50747 726 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 OR12D2P58182 307 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 SLC35F1Q5T1Q4 408 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 PM20D1Q6GTS8 502 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 ZCCHC12Q6PEW1 402 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 MAMDC4Q6UXC1 1216 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 CMTR2Q8IYT2 770 aaKnown RBP13.53□□□□□ -0.24
CPSF1-212ENST00000616140 BPIFB1Q8TDL5 484 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 MS4A12Q9NXJ0 267 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 COPS7AQ9UBW8 275 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 ONECUT3O60422 494 aaPredicted RBP13.53□□□□□ -0.24
CPSF1-212ENST00000616140 AGR2O95994 175 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 MT-ND2P03891 347 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 ZNF3P17036 446 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 MAP2K4P45985 399 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 STT3AP46977 705 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 LMAN2Q12907 356 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 CNKSR3Q6P9H4 555 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 CCDC36Q8IYA8 594 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 SLC25A36Q96CQ1 311 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 CD180Q99467 661 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 DPH2Q9BQC3 489 aaPredicted RBP13.53□□□□□ -0.24
CPSF1-212ENST00000616140 ZNF696Q9H7X3 374 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 POLE3Q9NRF9 147 aa13.53□□□□□ -0.24
CPSF1-212ENST00000616140 EDDM13A0A1B0GTR0 161 aa13.52□□□□□ -0.24
CPSF1-212ENST00000616140 TRIM3O75382 744 aaPredicted RBP13.52□□□□□ -0.24
CPSF1-212ENST00000616140 APOL3O95236 402 aa13.52□□□□□ -0.24
CPSF1-212ENST00000616140 EDN1P05305 212 aa13.52□□□□□ -0.24
CPSF1-212ENST00000616140 FAM189BP81408 668 aa13.52□□□□□ -0.24
CPSF1-212ENST00000616140 TMEM236Q5W0B7 351 aa13.52□□□□□ -0.24
CPSF1-212ENST00000616140 GALNT10Q86SR1 603 aa13.52□□□□□ -0.24
CPSF1-212ENST00000616140 LRRTM3Q86VH5 581 aa13.52□□□□□ -0.24
CPSF1-212ENST00000616140 CELF5Q8N6W0 485 aaKnown RBP13.52□□□□□ -0.24
CPSF1-212ENST00000616140 CAMKVQ8NCB2 501 aa13.52□□□□□ -0.24
CPSF1-212ENST00000616140 IRF7Q92985 503 aa13.52□□□□□ -0.24
CPSF1-212ENST00000616140 FATE1Q969F0 183 aa13.52□□□□□ -0.24
CPSF1-212ENST00000616140 GLYATL1Q969I3 302 aa13.52□□□□□ -0.24
CPSF1-212ENST00000616140 ERVK-18Q9QC07 812 aa13.52□□□□□ -0.24
CPSF1-212ENST00000616140 EIF3KQ9UBQ5 218 aaKnown RBP13.52□□□□□ -0.24
CPSF1-212ENST00000616140 GABRQQ9UN88 632 aa13.52□□□□□ -0.24
CPSF1-212ENST00000616140 OARD1Q9Y530 152 aa13.52□□□□□ -0.24
CPSF1-212ENST00000616140 PHRF1Q9P1Y6 1649 aaKnown RBP13.52□□□□□ -0.25
CPSF1-212ENST00000616140 A0A1W2PQ45 241 aaPredicted RBP13.52□□□□□ -0.25
CPSF1-212ENST00000616140 A0A1W2PQY0 241 aa13.52□□□□□ -0.25
CPSF1-212ENST00000616140 J3QLW9 94 aa13.52□□□□□ -0.25
CPSF1-212ENST00000616140 RPP14O95059 124 aaKnown RBP13.52□□□□□ -0.25
CPSF1-212ENST00000616140 HSD17B1P14061 328 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms