RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 RAB3IPQ96QF0 476 aaPredicted RBP13.61□□□□□ -0.23
USP39-220ENST00000613444 ZBTB18Q99592 522 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 GPATCH1Q9BRR8 931 aaKnown RBP13.61□□□□□ -0.23
USP39-220ENST00000613444 RAB33BQ9H082 229 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 AHSPQ9NZD4 102 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 SLAMF8Q9P0V8 285 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 U3KQA8 63 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 ARHGAP33O14559 1287 aa13.6□□□□□ -0.23
USP39-220ENST00000613444 GALR2O43603 387 aaPredicted RBP13.6□□□□□ -0.23
USP39-220ENST00000613444 IL6P05231 212 aa13.6□□□□□ -0.23
USP39-220ENST00000613444 SERPIND1P05546 499 aa13.6□□□□□ -0.23
USP39-220ENST00000613444 ASMTP46597 345 aa13.6□□□□□ -0.23
USP39-220ENST00000613444 SNRPNP63162 240 aaKnown RBP13.6□□□□□ -0.23
USP39-220ENST00000613444 BIRC2Q13490 618 aa13.6□□□□□ -0.23
USP39-220ENST00000613444 HKDC1Q2TB90 917 aa13.6□□□□□ -0.23
USP39-220ENST00000613444 TMEM35AQ53FP2 167 aa13.6□□□□□ -0.23
USP39-220ENST00000613444 FRMPD2BQ6IN97 320 aa13.6□□□□□ -0.23
USP39-220ENST00000613444 ARMC6Q6NXE6 501 aa13.6□□□□□ -0.23
USP39-220ENST00000613444 ZCCHC8Q6NZY4 707 aaKnown RBP13.6□□□□□ -0.23
USP39-220ENST00000613444 SLC2A7Q6PXP3 512 aa13.6□□□□□ -0.23
USP39-220ENST00000613444 AMER3Q8N944 861 aa13.6□□□□□ -0.23
USP39-220ENST00000613444 PCYOX1LQ8NBM8 494 aa13.6□□□□□ -0.23
USP39-220ENST00000613444 NT5CQ8TCD5 201 aa13.6□□□□□ -0.23
USP39-220ENST00000613444 C16orf78Q8WTQ4 265 aa13.6□□□□□ -0.23
USP39-220ENST00000613444 SLC13A3Q8WWT9 602 aa13.6□□□□□ -0.23
USP39-220ENST00000613444 MCUR1Q96AQ8 359 aa13.6□□□□□ -0.23
USP39-220ENST00000613444 RGMAQ96B86 450 aa13.6□□□□□ -0.23
USP39-220ENST00000613444 TEFMQ96QE5 360 aaKnown RBP13.6□□□□□ -0.23
USP39-220ENST00000613444 DDX31Q9H8H2 851 aaKnown RBP13.6□□□□□ -0.23
USP39-220ENST00000613444 EPHA6Q9UF33 1036 aa13.6□□□□□ -0.23
USP39-220ENST00000613444 LEF1Q9UJU2 399 aaPredicted RBP13.6□□□□□ -0.23
USP39-220ENST00000613444 BTBD3Q9Y2F9 522 aa13.6□□□□□ -0.23
USP39-220ENST00000613444 IGHV1OR21-1A0A087WYE8 117 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 LOC105369274A0A096LPK9 316 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 LOC102723532A0A0G2JNH3 316 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 A0A0J9YVX5 310 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 GNG14A0A1W2PPG7 69 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 YKT6O15498 198 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 CFLARO15519 480 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 P2RX6O15547 441 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 AKAP10O43572 662 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 HCRTR1O43613 425 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 RAP1GDS1P52306 607 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 GFERP55789 205 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 OR1D5P58170 312 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 CFHR1Q03591 330 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 NKAIN2Q5VXU1 208 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 ABHD17CQ6PCB6 329 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 DLEU7Q6UYE1 221 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 ZNF793Q6ZN11 406 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 ULK2Q8IYT8 1036 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 OR4N4Q8N0Y3 316 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 FAM13CQ8NE31 585 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 THAP11Q96EK4 314 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 MAP3K3Q99759 626 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 ZFYVE21Q9BQ24 234 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 SLC39A3Q9BRY0 314 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 DUSP23Q9BVJ7 150 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 FAM60AQ9NP50 221 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 MYNNQ9NPC7 610 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 PRDM7Q9NQW5 492 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 NDE1Q9NXR1 346 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 NEUROG3Q9Y4Z2 214 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 SCAMP2O15127 329 aaKnown RBP13.59□□□□□ -0.23
USP39-220ENST00000613444 CAPN5O15484 640 aaPredicted RBP13.59□□□□□ -0.23
USP39-220ENST00000613444 B4GAT1O43505 415 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 KIF1CO43896 1103 aaKnown RBP13.59□□□□□ -0.23
USP39-220ENST00000613444 SCN2BO60939 215 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 EPN2O95208 641 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 ALDH4A1P30038 563 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 GPR3P46089 330 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 ARFIP1P53367 373 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 WNT3P56703 355 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 PSME3P61289 254 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 PWP1Q13610 501 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 OR4C11Q6IEV9 310 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 FAM71E1Q6IPT2 247 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 IRGCQ6NXR0 463 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 DGLUCYQ7Z3D6 616 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 CAMKMTQ7Z624 323 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 ASPGQ86U10 573 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 KCT2Q8NC54 265 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 OR2L5Q8NG80 312 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 OR7A2PQ8NGA2 310 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 GTF2H4Q92759 462 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 LRRC58Q96CX6 371 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 LOXL4Q96JB6 756 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 C17orf62Q9BQA9 187 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 SMOC1Q9H4F8 434 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 SERHLQ9NQF3 203 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 C1GALT1Q9NS00 363 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 SLC7A8Q9UHI5 535 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 ADAM29Q9UKF5 820 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 PADI4Q9UM07 663 aa13.59□□□□□ -0.23
USP39-220ENST00000613444 A0A0A6YYD5 115 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 SLC9B1P1A6NJY1 282 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 GABRR3A8MPY1 467 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 H0YGG7 62 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 CASC3O15234 703 aaKnown RBP13.58□□□□□ -0.24
USP39-220ENST00000613444 SIGLEC6O43699 453 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms