RNA–Protein interactions for RNA: ENST00000607841.5

CTSA-219, Transcript of cathepsin A, humanhuman

TSL 2

Gene CTSA, Length 571 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-219ENST00000607841 TTC19Q6DKK2 380 aaPredicted RBP13.54□□□□□ -0.24
CTSA-219ENST00000607841 MRPL14Q6P1L8 145 aaKnown RBP13.54□□□□□ -0.24
CTSA-219ENST00000607841 INO80CQ6PI98 192 aaPredicted RBP13.54□□□□□ -0.24
CTSA-219ENST00000607841 CHSY3Q70JA7 882 aa13.54□□□□□ -0.24
CTSA-219ENST00000607841 AFAP1L2Q8N4X5 818 aa13.54□□□□□ -0.24
CTSA-219ENST00000607841 SRFBP1Q8NEF9 429 aaKnown RBP13.54□□□□□ -0.24
CTSA-219ENST00000607841 OR4F6Q8NGB9 312 aa13.54□□□□□ -0.24
CTSA-219ENST00000607841 OR9A4Q8NGU2 314 aa13.54□□□□□ -0.24
CTSA-219ENST00000607841 UTP15Q8TED0 518 aaKnown RBP13.54□□□□□ -0.24
CTSA-219ENST00000607841 ZNF473Q8WTR7 871 aaKnown RBP13.54□□□□□ -0.24
CTSA-219ENST00000607841 CMTM7Q96FZ5 175 aa13.54□□□□□ -0.24
CTSA-219ENST00000607841 FAR2Q96K12 515 aa13.54□□□□□ -0.24
CTSA-219ENST00000607841 CDK15Q96Q40 435 aa13.54□□□□□ -0.24
CTSA-219ENST00000607841 ZNF382Q96SR6 550 aa13.54□□□□□ -0.24
CTSA-219ENST00000607841 CENPKQ9BS16 269 aa13.54□□□□□ -0.24
CTSA-219ENST00000607841 YIPF2Q9BWQ6 316 aa13.54□□□□□ -0.24
CTSA-219ENST00000607841 REXO4Q9GZR2 422 aaKnown RBP13.54□□□□□ -0.24
CTSA-219ENST00000607841 SLC26A1Q9H2B4 701 aa13.54□□□□□ -0.24
CTSA-219ENST00000607841 ACTL8Q9H568 366 aa13.54□□□□□ -0.24
CTSA-219ENST00000607841 WDR54Q9H977 334 aa13.54□□□□□ -0.24
CTSA-219ENST00000607841 VIPAS39Q9H9C1 493 aa13.54□□□□□ -0.24
CTSA-219ENST00000607841 CLK4Q9HAZ1 481 aaKnown RBP13.54□□□□□ -0.24
CTSA-219ENST00000607841 TMBIM4Q9HC24 238 aa13.54□□□□□ -0.24
CTSA-219ENST00000607841 KCNK9Q9NPC2 374 aa13.54□□□□□ -0.24
CTSA-219ENST00000607841 SLC22A11Q9NSA0 550 aa13.54□□□□□ -0.24
CTSA-219ENST00000607841 SLC17A7Q9P2U7 560 aa13.54□□□□□ -0.24
CTSA-219ENST00000607841 ZNF282Q9UDV7 671 aaPredicted RBP13.54□□□□□ -0.24
CTSA-219ENST00000607841 IL17BQ9UHF5 180 aa13.54□□□□□ -0.24
CTSA-219ENST00000607841 TCFL5Q9UL49 500 aa13.54□□□□□ -0.24
CTSA-219ENST00000607841 MRPS2Q9Y399 296 aaKnown RBP13.54□□□□□ -0.24
CTSA-219ENST00000607841 RNF11Q9Y3C5 154 aa13.54□□□□□ -0.24
CTSA-219ENST00000607841 SDK2Q58EX2 2172 aa13.54□□□□□ -0.24
CTSA-219ENST00000607841 KLHL18O94889 574 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 ZWINTO95229 277 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 ZNF888P0CJ79 500 aaPredicted RBP13.53□□□□□ -0.24
CTSA-219ENST00000607841 IL1RNP18510 177 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 TSPAN8P19075 237 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 ITGAXP20702 1163 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 FOLR3P41439 243 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 PKNOX1P55347 436 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 CXADRP78310 365 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 HYAL2Q12891 473 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 IFT88Q13099 833 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 TRAF3Q13114 568 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 COL9A2Q14055 689 aaPredicted RBP13.53□□□□□ -0.24
CTSA-219ENST00000607841 PCLAFQ15004 111 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 ZRSR2Q15696 482 aaKnown RBP13.53□□□□□ -0.24
CTSA-219ENST00000607841 DEFB134Q4QY38 66 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 TMEM35AQ53FP2 167 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 TRIM40Q6P9F5 258 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 GPRIN3Q6ZVF9 776 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 RPS27LQ71UM5 84 aaKnown RBP13.53□□□□□ -0.24
CTSA-219ENST00000607841 VN1R5Q7Z5H4 357 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 C10orf107Q8IVU9 208 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 GOLGA6L1Q8N7Z2 621 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 OR2L5Q8NG80 312 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 HUS1BQ8NHY5 278 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.53□□□□□ -0.24
CTSA-219ENST00000607841 GAL3ST3Q96A11 431 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 ZBTB9Q96C00 473 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 MIEF2Q96C03 454 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 ROGDIQ9GZN7 287 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 ELOVL6Q9H5J4 265 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 CPNE5Q9HCH3 593 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 MKKSQ9NPJ1 570 aaPredicted RBP13.53□□□□□ -0.24
CTSA-219ENST00000607841 PSD3Q9NYI0 1048 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 TRPC4Q9UBN4 977 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 TRPS1Q9UHF7 1281 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 SNX6Q9UNH7 406 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 PTRH2Q9Y3E5 179 aaKnown RBP13.53□□□□□ -0.24
CTSA-219ENST00000607841 NAALAD2Q9Y3Q0 740 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 MAP4K5Q9Y4K4 846 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 IGF2RP11717 2491 aa13.53□□□□□ -0.24
CTSA-219ENST00000607841 ANKRD12Q6UB98 2062 aa13.52□□□□□ -0.24
CTSA-219ENST00000607841 APC2O95996 2303 aa13.52□□□□□ -0.24
CTSA-219ENST00000607841 SGK494L7N484 410 aa13.52□□□□□ -0.25
CTSA-219ENST00000607841 FOXE1O00358 373 aaPredicted RBP13.52□□□□□ -0.25
CTSA-219ENST00000607841 ERI3O43414 337 aaKnown RBP13.52□□□□□ -0.25
CTSA-219ENST00000607841 GALR3O60755 368 aaPredicted RBP13.52□□□□□ -0.25
CTSA-219ENST00000607841 SMIM10L1P0DMW3 83 aa13.52□□□□□ -0.25
CTSA-219ENST00000607841 WT1P19544 449 aaPredicted RBP13.52□□□□□ -0.25
CTSA-219ENST00000607841 IL10P22301 178 aa13.52□□□□□ -0.25
CTSA-219ENST00000607841 PTX3P26022 381 aaPredicted RBP13.52□□□□□ -0.25
CTSA-219ENST00000607841 RAB8AP61006 207 aa13.52□□□□□ -0.25
CTSA-219ENST00000607841 DDX39BQ13838 428 aaKnown RBP13.52□□□□□ -0.25
CTSA-219ENST00000607841 SSPNQ14714 243 aa13.52□□□□□ -0.25
CTSA-219ENST00000607841 NKG7Q16617 165 aa13.52□□□□□ -0.25
CTSA-219ENST00000607841 ADPRMQ3LIE5 342 aa13.52□□□□□ -0.25
CTSA-219ENST00000607841 FRG2Q64ET8 278 aa13.52□□□□□ -0.25
CTSA-219ENST00000607841 COX15Q7KZN9 410 aa13.52□□□□□ -0.25
CTSA-219ENST00000607841 HOMEZQ8IX15 550 aa13.52□□□□□ -0.25
CTSA-219ENST00000607841 DTWD1Q8N5C7 304 aa13.52□□□□□ -0.25
CTSA-219ENST00000607841 OR2Y1Q8NGV0 311 aa13.52□□□□□ -0.25
CTSA-219ENST00000607841 WDR20Q8TBZ3 569 aa13.52□□□□□ -0.25
CTSA-219ENST00000607841 SNRNP27Q8WVK2 155 aaKnown RBP13.52□□□□□ -0.25
CTSA-219ENST00000607841 MS4A6EQ96DS6 147 aa13.52□□□□□ -0.25
CTSA-219ENST00000607841 SMIM10Q96HG1 83 aa13.52□□□□□ -0.25
CTSA-219ENST00000607841 CNDP1Q96KN2 507 aa13.52□□□□□ -0.25
CTSA-219ENST00000607841 KCNC2Q96PR1 638 aa13.52□□□□□ -0.25
CTSA-219ENST00000607841 FRG2BQ96QU4 278 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms