RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 TMEM198Q66K66 360 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 RHBDD2Q6NTF9 364 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 MYO1HQ8N1T3 1032 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 SPDYE1Q8NFV5 336 aaPredicted RBP13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 RHEBL1Q8TAI7 183 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 PROKR1Q8TCW9 393 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 ASB11Q8WXH4 323 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 KIAA1191Q96A73 305 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 RMDN2Q96LZ7 410 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 NRTNQ99748 197 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 TFB2MQ9H5Q4 396 aaKnown RBP13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 KIR3DX1Q9H7L2 352 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 TMEM216Q9P0N5 145 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 ABI3Q9P2A4 366 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 PTGFRNQ9P2B2 879 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 EMCNQ9ULC0 261 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 GRID1Q9ULK0 1009 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 MEMO1Q9Y316 297 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 HS3ST3B1Q9Y662 390 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 JMJD1CQ15652 2540 aa13.21□□□□□ -0.29
SHKBP1-218ENST00000598907 SEC16AO15027 2179 aa13.21□□□□□ -0.3
SHKBP1-218ENST00000598907 TARM1B6A8C7 271 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 H3BQF6 201 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 CDC7O00311 574 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 SLC16A5O15375 505 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 SPAG7O75391 227 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 PSIP1O75475 530 aaKnown RBP13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 SBK3P0C264 359 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 MSL3P1P0C860 447 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 TFEBP19484 476 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 PRDX3P30048 256 aaKnown RBP13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 KCNC1P48547 511 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 MPP2Q14168 576 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 KRT33BQ14525 404 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 RBBP7Q16576 425 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 TECRLQ5HYJ1 363 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 KIRREL2Q6UWL6 708 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 SBSNQ6UWP8 590 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 UNC5DQ6UXZ4 953 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 FAM20CQ8IXL6 584 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 ZNF655Q8N720 491 aaPredicted RBP13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 ACBD4Q8NC06 268 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 FBXO15Q8NCQ5 510 aaPredicted RBP13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 DENND1AQ8TEH3 1009 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 CA5BP1Q8WTZ4 195 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 DLG3Q92796 817 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 SDCCAG3Q96C92 435 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 ATOH8Q96SQ7 321 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 ZNF559Q9BR84 538 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 MESP1Q9BRJ9 268 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 FAM53CQ9NYF3 392 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 ADAMTS6Q9UKP5 1117 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 PLLPQ9Y342 182 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 AP1M2Q9Y6Q5 423 aa13.2□□□□□ -0.3
SHKBP1-218ENST00000598907 ABCA4P78363 2273 aa13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 FAM227AF5H4B4 570 aa13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 BTN3A1O00481 513 aa13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 ZSCAN9O15535 394 aaPredicted RBP13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 HCRTR1O43613 425 aa13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 PLIN3O60664 434 aa13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 PROCP04070 461 aa13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 C8GP07360 202 aa13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 SLC35G4P0C7Q5 338 aa13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 ETV4P43268 484 aa13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 SP140Q13342 867 aa13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 OR4D1Q15615 310 aa13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 PPP1R3AQ16821 1122 aa13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 C3P1Q6ZMU1 363 aa13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 CXXC5Q7LFL8 322 aaKnown RBP13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 TRIM73Q86UV7 250 aa13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 TCP10LQ8TDR4 215 aa13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 ZFPM2Q8WW38 1151 aa13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 LMF1Q96S06 567 aa13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 TREX2Q9BQ50 279 aaPredicted RBP13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 MRPL57Q9BQC6 102 aaKnown RBP13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 PITPNM3Q9BZ71 974 aa13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 TSPAN10Q9H1Z9 355 aaPredicted RBP13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 SRMSQ9H3Y6 488 aa13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 SOX17Q9H6I2 414 aaPredicted RBP13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 ZNF160Q9HCG1 818 aa13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 FAM60AQ9NP50 221 aa13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 SLC22A11Q9NSA0 550 aa13.19□□□□□ -0.3
SHKBP1-218ENST00000598907 NPEPPSL1A6NEC2 478 aa13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 MATN2O00339 956 aa13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 IFRD1O00458 451 aaPredicted RBP13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 BTN3A3O00478 584 aa13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 TM9SF1O15321 606 aa13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 ZNHIT1O43257 154 aa13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 C1orf105O95561 183 aa13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 ENO2P09104 434 aaPredicted RBP13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 RBP1P09455 135 aa13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 RPA3P35244 121 aaPredicted RBP13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 FOLH1Q04609 750 aa13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 TSNQ15631 228 aaKnown RBP13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 CCDC153Q494R4 210 aa13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 HSP90B2PQ58FF3 399 aa13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 KLC3Q6P597 504 aa13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 ADAMTSL2Q86TH1 951 aa13.18□□□□□ -0.3
SHKBP1-218ENST00000598907 BIVMQ86UB2 503 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms