RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 MARK4Q96L34 752 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 FCRL1Q96LA6 429 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 PPM1MQ96MI6 270 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 GFM1Q96RP9 751 aaKnown RBP14.55□□□□□ -0.08
TRIM28-209ENST00000597423 PRPF18Q99633 342 aaKnown RBP14.55□□□□□ -0.08
TRIM28-209ENST00000597423 MRPL1Q9BYD6 325 aaKnown RBP14.55□□□□□ -0.08
TRIM28-209ENST00000597423 KLHL3Q9UH77 587 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 MCM8Q9UJA3 840 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 BTBD3Q9Y2F9 522 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 POLR3HQ9Y535 204 aaPredicted RBP14.55□□□□□ -0.08
TRIM28-209ENST00000597423 PCDH15Q96QU1 1955 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 IGHV5-51A0A0C4DH38 117 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 FAM234BA2RU67 622 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 ERICH4A6NGS2 130 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 SAP18O00422 153 aaKnown RBP14.54□□□□□ -0.08
TRIM28-209ENST00000597423 KIF1CO43896 1103 aaKnown RBP14.54□□□□□ -0.08
TRIM28-209ENST00000597423 ETHE1O95571 254 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 EIF2S1P05198 315 aaKnown RBP14.54□□□□□ -0.08
TRIM28-209ENST00000597423 KLK1P06870 262 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 SNRPB2P08579 225 aaKnown RBP14.54□□□□□ -0.08
TRIM28-209ENST00000597423 CD59P13987 128 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 PRPS1L1P21108 318 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 CLDN8P56748 225 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 KCNK10P57789 538 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 TRA2BP62995 288 aaKnown RBP14.54□□□□□ -0.08
TRIM28-209ENST00000597423 E2F1Q01094 437 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 BNIP1Q12981 228 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 ILKQ13418 452 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 NDUFA9Q16795 377 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 ADPRMQ3LIE5 342 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 SNAP47Q5SQN1 464 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 FOXR1Q6PIV2 292 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 PRR23CQ6ZRP0 262 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 NUDT13Q86X67 352 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 NAXDQ8IW45 347 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 KLHL6Q8WZ60 621 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 GAL3ST3Q96A11 431 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 MS4A6EQ96DS6 147 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 SLC25A23Q9BV35 468 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 SLC6A16Q9GZN6 736 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 SYNDIG1Q9H7V2 258 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 FANCEQ9HB96 536 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 CCDC167Q9P0B6 97 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 PDP2Q9P2J9 529 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 SERTAD3Q9UJW9 196 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 CABIN1Q9Y6J0 2220 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 MUC3AQ02505 3323 aa14.54□□□□□ -0.08
TRIM28-209ENST00000597423 ZNF318Q5VUA4 2279 aa14.53□□□□□ -0.08
TRIM28-209ENST00000597423 LOC100653049A0A140TA62 436 aa14.53□□□□□ -0.08
TRIM28-209ENST00000597423 ERI3O43414 337 aaKnown RBP14.53□□□□□ -0.08
TRIM28-209ENST00000597423 KRT34O76011 436 aa14.53□□□□□ -0.08
TRIM28-209ENST00000597423 COX4I1P13073 169 aa14.53□□□□□ -0.08
TRIM28-209ENST00000597423 JAK1P23458 1154 aa14.53□□□□□ -0.08
TRIM28-209ENST00000597423 SSR2P43308 183 aa14.53□□□□□ -0.08
TRIM28-209ENST00000597423 POLR2JP52435 117 aaKnown RBP14.53□□□□□ -0.08
TRIM28-209ENST00000597423 PLA2G16P53816 162 aa14.53□□□□□ -0.08
TRIM28-209ENST00000597423 NME5P56597 212 aa14.53□□□□□ -0.08
TRIM28-209ENST00000597423 VSX2P58304 361 aaPredicted RBP14.53□□□□□ -0.08
TRIM28-209ENST00000597423 CFHR1Q03591 330 aa14.53□□□□□ -0.08
TRIM28-209ENST00000597423 TRA2AQ13595 282 aaKnown RBP eCLIP14.53□□□□□ -0.08
TRIM28-209ENST00000597423 LACTB2Q53H82 288 aaPredicted RBP14.53□□□□□ -0.08
TRIM28-209ENST00000597423 WASHC2DQ5SRD0 308 aa14.53□□□□□ -0.08
TRIM28-209ENST00000597423 CYB5D1Q6P9G0 228 aa14.53□□□□□ -0.08
TRIM28-209ENST00000597423 ABHD17CQ6PCB6 329 aa14.53□□□□□ -0.08
TRIM28-209ENST00000597423 PAOXQ6QHF9 649 aa14.53□□□□□ -0.08
TRIM28-209ENST00000597423 IKBIPQ70UQ0 350 aa14.53□□□□□ -0.08
TRIM28-209ENST00000597423 VN1R4Q7Z5H5 301 aa14.53□□□□□ -0.08
TRIM28-209ENST00000597423 R3HCC1LQ7Z5L2 792 aaKnown RBP14.53□□□□□ -0.08
TRIM28-209ENST00000597423 C11orf24Q96F05 449 aaPredicted RBP14.53□□□□□ -0.08
TRIM28-209ENST00000597423 SLC41A2Q96JW4 573 aa14.53□□□□□ -0.08
TRIM28-209ENST00000597423 ZNF768Q9H5H4 540 aaKnown RBP14.53□□□□□ -0.08
TRIM28-209ENST00000597423 DDX31Q9H8H2 851 aaKnown RBP14.53□□□□□ -0.08
TRIM28-209ENST00000597423 COPS7BQ9H9Q2 264 aaPredicted RBP14.53□□□□□ -0.08
TRIM28-209ENST00000597423 EFCAB1Q9HAE3 211 aa14.53□□□□□ -0.08
TRIM28-209ENST00000597423 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.53□□□□□ -0.087e-7■□□□□ 8.2
TRIM28-209ENST00000597423 IRAK4Q9NWZ3 460 aa14.53□□□□□ -0.08
TRIM28-209ENST00000597423 TMEM131Q92545 1883 aa14.52□□□□□ -0.08
TRIM28-209ENST00000597423 LOC105369274A0A096LPK9 316 aa14.52□□□□□ -0.09
TRIM28-209ENST00000597423 LOC102723532A0A0G2JNH3 316 aa14.52□□□□□ -0.09
TRIM28-209ENST00000597423 C4orf47A7E2U8 309 aa14.52□□□□□ -0.09
TRIM28-209ENST00000597423 BBIP1A8MTZ0 92 aa14.52□□□□□ -0.09
TRIM28-209ENST00000597423 A8MU76 341 aa14.52□□□□□ -0.09
TRIM28-209ENST00000597423 TMX2-CTNND1H3BSU7 103 aa14.52□□□□□ -0.09
TRIM28-209ENST00000597423 PLPP1O14494 284 aa14.52□□□□□ -0.09
TRIM28-209ENST00000597423 SH3BP5O60239 455 aa14.52□□□□□ -0.09
TRIM28-209ENST00000597423 NRP2O60462 931 aa14.52□□□□□ -0.09
TRIM28-209ENST00000597423 PRAMEF10O60809 474 aa14.52□□□□□ -0.09
TRIM28-209ENST00000597423 IL6P05231 212 aa14.52□□□□□ -0.09
TRIM28-209ENST00000597423 ANKRD34CP0C6C1 535 aa14.52□□□□□ -0.09
TRIM28-209ENST00000597423 MSL3P1P0C860 447 aa14.52□□□□□ -0.09
TRIM28-209ENST00000597423 HOXB3P14651 431 aaPredicted RBP14.52□□□□□ -0.09
TRIM28-209ENST00000597423 NELFEP18615 380 aaKnown RBP14.52□□□□□ -0.09
TRIM28-209ENST00000597423 SDC1P18827 310 aa14.52□□□□□ -0.09
TRIM28-209ENST00000597423 HNRNPH1P31943 449 aaKnown RBP14.52□□□□□ -0.09
TRIM28-209ENST00000597423 CSF2RBP32927 897 aa14.52□□□□□ -0.09
TRIM28-209ENST00000597423 HPCAL1P37235 193 aa14.52□□□□□ -0.09
TRIM28-209ENST00000597423 MAPK12P53778 367 aa14.52□□□□□ -0.09
TRIM28-209ENST00000597423 EMP3P54852 163 aa14.52□□□□□ -0.09
TRIM28-209ENST00000597423 UFM1P61960 85 aa14.52□□□□□ -0.09
TRIM28-209ENST00000597423 SRSF11Q05519 484 aaKnown RBP14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms