RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	PAGE3	Q5JUK9	113 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	NXPE4	Q6UWF7	544 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	LAYN	Q6UX15	382 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318		Q6ZSR6	202 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	IGFN1	Q86VF2	1251 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	LAS2	Q8IYD9	372 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	SIX5	Q8N196	739 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	FAM160A2	Q8N612	972 aa	Predicted RBP	14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	CCL4L1	Q8NHW4	92 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	RLN3	Q8WXF3	142 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	ROPN1L	Q96C74	230 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	C11orf24	Q96F05	449 aa	Predicted RBP	14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	CAMK1G	Q96NX5	476 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	FERD3L	Q96RJ6	166 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	SLC39A3	Q9BRY0	314 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	C9orf16	Q9BUW7	83 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	TPSD1	Q9BZJ3	242 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	NDEL1	Q9GZM8	345 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	POLR1B	Q9H9Y6	1135 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	TBC1D29	Q9UFV1	150 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	PCDHGA11	Q9Y5H2	935 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	SNX13	Q9Y5W8	968 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	IGHV1OR15-9	A0A0B4J2B8	117 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	PRAMEF33	A0A0G2JMD5	474 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	PDZK1P1	A8MUH7	402 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	MAGEB17	A8MXT2	336 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	CENPBD1	B2RD01	187 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	PRAMEF26	H0Y7S4	382 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	RGS13	O14921	159 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	ANGPT2	O15123	496 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	EED	O75530	441 aa	Known RBP	14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	AK4	P27144	223 aa	Predicted RBP	14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	HTR1B	P28222	390 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	CD6	P30203	668 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	HSD17B2	P37059	387 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	MERTK	Q12866	999 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	SLBP	Q14493	270 aa	Known RBP eCLIP	14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	RPE65	Q16518	533 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	SLC36A3	Q495N2	470 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	TIGD2	Q4W5G0	525 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	ERMP1	Q7Z2K6	904 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	OR13F1	Q8NGS4	319 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	HUS1B	Q8NHY5	278 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	TANK	Q92844	425 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	SLC29A1	Q99808	456 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	EFCAB11	Q9BUY7	163 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	ADI1	Q9BV57	179 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	TRIM15	Q9C019	465 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	TMEM168	Q9H0V1	697 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	BRF2	Q9HAW0	419 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	GPR27	Q9NS67	375 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	FBXL21	Q9UKT6	434 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	SLCO1B1	Q9Y6L6	691 aa		14.78	□□□□□ -0.04
DDX39A-209	ENST00000589318	SNRNP200	O75643	2136 aa	Known RBP	14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	PIPSL	A2A3N6	862 aa		14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	CCDC154	A6NI56	674 aa		14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	DNAJB5	O75953	348 aa		14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	CDH1	P12830	882 aa		14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	HSD3B1	P14060	373 aa		14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	ACPP	P15309	386 aa		14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	SDC1	P18827	310 aa		14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	TACR1	P25103	407 aa		14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	HSD3B2	P26439	372 aa		14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	PSMB5	P28074	263 aa		14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	OXTR	P30559	389 aa		14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	HLCS	P50747	726 aa		14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	SRP54	P61011	504 aa	Known RBP	14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	DDX39B	Q13838	428 aa	Known RBP	14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	MTX3	Q5HYI7	312 aa		14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	CACHD1	Q5VU97	1274 aa		14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	MED27	Q6P2C8	311 aa		14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	GALNT18	Q6P9A2	607 aa		14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	TMEM26	Q6ZUK4	368 aa		14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	FAM129C	Q86XR2	697 aa		14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	SHD	Q96IW2	340 aa		14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	ACAT2	Q9BWD1	397 aa		14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	TMEM181	Q9P2C4	612 aa		14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	VPS29	Q9UBQ0	182 aa		14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	TAC3	Q9UHF0	121 aa		14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	PCOLCE2	Q9UKZ9	415 aa		14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	ZBTB32	Q9Y2Y4	487 aa	Predicted RBP	14.77	□□□□□ -0.04
DDX39A-209	ENST00000589318	TOR1B	O14657	336 aa		14.76	□□□□□ -0.05
DDX39A-209	ENST00000589318	MTHFD1	P11586	935 aa	Known RBP	14.76	□□□□□ -0.05
DDX39A-209	ENST00000589318	PKLR	P30613	574 aa		14.76	□□□□□ -0.05
DDX39A-209	ENST00000589318	RABIF	P47224	123 aa		14.76	□□□□□ -0.05
DDX39A-209	ENST00000589318	MEF2A	Q02078	507 aa	Predicted RBP	14.76	□□□□□ -0.05
DDX39A-209	ENST00000589318	SPCS2	Q15005	226 aa		14.76	□□□□□ -0.05
DDX39A-209	ENST00000589318	SAMD4B	Q5PRF9	694 aa	Known RBP	14.76	□□□□□ -0.05
DDX39A-209	ENST00000589318	TMEM214	Q6NUQ4	689 aa	Known RBP	14.76	□□□□□ -0.05
DDX39A-209	ENST00000589318	WASH2P	Q6VEQ5	465 aa		14.76	□□□□□ -0.05
DDX39A-209	ENST00000589318	RD3	Q7Z3Z2	195 aa		14.76	□□□□□ -0.05
DDX39A-209	ENST00000589318	NRROS	Q86YC3	692 aa		14.76	□□□□□ -0.05
DDX39A-209	ENST00000589318	KRTCAP2	Q8N6L1	136 aa		14.76	□□□□□ -0.05
DDX39A-209	ENST00000589318	RNF148	Q8N7C7	305 aa		14.76	□□□□□ -0.05
DDX39A-209	ENST00000589318	ZNF740	Q8NDX6	193 aa		14.76	□□□□□ -0.05
DDX39A-209	ENST00000589318	SMPDL3A	Q92484	453 aa		14.76	□□□□□ -0.05
DDX39A-209	ENST00000589318	APOLD1	Q96LR9	279 aa		14.76	□□□□□ -0.05
DDX39A-209	ENST00000589318	CIB1	Q99828	191 aa		14.76	□□□□□ -0.05

Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms