RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 STAG3L4Q8TBR4 150 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 BRIX1Q8TDN6 353 aaKnown RBP11.69□□□□□ -0.54
SS18-225ENST00000585121 MOCOSQ96EN8 888 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 PEX11GQ96HA9 241 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 LRRC1Q9BTT6 524 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 PITHD1Q9GZP4 211 aaPredicted RBP11.69□□□□□ -0.54
SS18-225ENST00000585121 NMRAL1Q9HBL8 299 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 PRM3Q9NNZ6 103 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 DNAJC11Q9NVH1 559 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 GPRC5BQ9NZH0 403 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 PCDHGA10Q9Y5H3 936 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 HECTD1Q9ULT8 2610 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 STK16O75716 305 aa11.68□□□□□ -0.54
SS18-225ENST00000585121 SEC24DO94855 1032 aaPredicted RBP11.68□□□□□ -0.54
SS18-225ENST00000585121 WISP3O95389 354 aaPredicted RBP11.68□□□□□ -0.54
SS18-225ENST00000585121 FHP07954 510 aa11.68□□□□□ -0.54
SS18-225ENST00000585121 GSTM2P28161 218 aa11.68□□□□□ -0.54
SS18-225ENST00000585121 HNF4AP41235 474 aa11.68□□□□□ -0.54
SS18-225ENST00000585121 UQCRFS1P47985 274 aa11.68□□□□□ -0.54
SS18-225ENST00000585121 SLC6A12P48065 614 aa11.68□□□□□ -0.54
SS18-225ENST00000585121 SNRPNP63162 240 aaKnown RBP11.68□□□□□ -0.54
SS18-225ENST00000585121 ABRAXAS2Q15018 415 aa11.68□□□□□ -0.54
SS18-225ENST00000585121 NSDHLQ15738 373 aa11.68□□□□□ -0.54
SS18-225ENST00000585121 ZKSCAN8Q15776 578 aaPredicted RBP11.68□□□□□ -0.54
SS18-225ENST00000585121 ABHD17BQ5VST6 288 aa11.68□□□□□ -0.54
SS18-225ENST00000585121 B3GNTL1Q67FW5 361 aaPredicted RBP11.68□□□□□ -0.54
SS18-225ENST00000585121 TMIGD1Q6UXZ0 262 aa11.68□□□□□ -0.54
SS18-225ENST00000585121 SLCO4C1Q6ZQN7 724 aa11.68□□□□□ -0.54
SS18-225ENST00000585121 ANKRD37Q7Z713 158 aa11.68□□□□□ -0.54
SS18-225ENST00000585121 SIRT6Q8N6T7 355 aa11.68□□□□□ -0.54
SS18-225ENST00000585121 ANKRD53Q8N9V6 530 aa11.68□□□□□ -0.54
SS18-225ENST00000585121 PLPP5Q8NEB5 264 aa11.68□□□□□ -0.54
SS18-225ENST00000585121 UTP15Q8TED0 518 aaKnown RBP11.68□□□□□ -0.54
SS18-225ENST00000585121 CCT6BQ92526 530 aa11.68□□□□□ -0.54
SS18-225ENST00000585121 KIAA1191Q96A73 305 aa11.68□□□□□ -0.54
SS18-225ENST00000585121 TBC1D20Q96BZ9 403 aa11.68□□□□□ -0.54
SS18-225ENST00000585121 C19orf60Q96EN9 201 aa11.68□□□□□ -0.54
SS18-225ENST00000585121 SEC16BQ96JE7 1060 aa11.68□□□□□ -0.54
SS18-225ENST00000585121 FAR2Q96K12 515 aa11.68□□□□□ -0.54
SS18-225ENST00000585121 SPNS1Q9H2V7 528 aa11.68□□□□□ -0.54
SS18-225ENST00000585121 ASF1BQ9NVP2 202 aa11.68□□□□□ -0.54
SS18-225ENST00000585121 RELNP78509 3460 aa11.68□□□□□ -0.54
SS18-225ENST00000585121 A0A088AWK7 358 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 ANKDD1BA6NHY2 528 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 TCP11X1B4DZS4 312 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 CHST10O43529 356 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 CDC123O75794 336 aaPredicted RBP11.67□□□□□ -0.54
SS18-225ENST00000585121 FAM155BO75949 473 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 AGFG2O95081 481 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 C1QAP02745 245 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 ITGAMP11215 1152 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 ZNF10P21506 573 aaPredicted RBP11.67□□□□□ -0.54
SS18-225ENST00000585121 SOX11P35716 441 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 GGT5P36269 586 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 TSFMP43897 325 aaKnown RBP11.67□□□□□ -0.54
SS18-225ENST00000585121 RAB8AP61006 207 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 LAPTM5Q13571 262 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 SLBPQ14493 270 aaKnown RBP eCLIP11.67□□□□□ -0.54
SS18-225ENST00000585121 OR4D1Q15615 310 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 EXT1Q16394 746 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 HIST2H2ACQ16777 129 aaPredicted RBP11.67□□□□□ -0.54
SS18-225ENST00000585121 BTBD16Q32M84 506 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 C18orf21Q32NC0 220 aaPredicted RBP11.67□□□□□ -0.54
SS18-225ENST00000585121 TOR1AIP1Q5JTV8 583 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 HIST2H2AA3Q6FI13 130 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 LANCL3Q6ZV70 420 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 ARMC2Q8NEN0 867 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 OR5T3Q8NGG3 340 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 OR1N1Q8NGS0 311 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 SUN3Q8TAQ9 357 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 HAS2Q92819 552 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 EXT2Q93063 718 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 MRRFQ96E11 262 aaKnown RBP11.67□□□□□ -0.54
SS18-225ENST00000585121 UBXN10Q96LJ8 280 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 IMMP1LQ96LU5 166 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 RBCK1Q9BYM8 510 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 SLC6A16Q9GZN6 736 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.67□□□□□ -0.54
SS18-225ENST00000585121 EHD1Q9H4M9 534 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 ALG9Q9H6U8 611 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 NT5DC2Q9H857 520 aa11.67□□□□□ -0.54
SS18-225ENST00000585121 TRAV17A0A0B4J275 112 aa11.66□□□□□ -0.54
SS18-225ENST00000585121 IGHV3-20A0A0C4DH32 117 aa11.66□□□□□ -0.54
SS18-225ENST00000585121 CTAGE15A4D2H0 777 aa11.66□□□□□ -0.54
SS18-225ENST00000585121 SYCE1LA8MT33 242 aa11.66□□□□□ -0.54
SS18-225ENST00000585121 A8MUI8 341 aa11.66□□□□□ -0.54
SS18-225ENST00000585121 MAGEB17A8MXT2 336 aa11.66□□□□□ -0.54
SS18-225ENST00000585121 SUPT3HB4E1H0 165 aa11.66□□□□□ -0.54
SS18-225ENST00000585121 TAPBPO15533 448 aa11.66□□□□□ -0.54
SS18-225ENST00000585121 CCNT2O60583 730 aaKnown RBP11.66□□□□□ -0.54
SS18-225ENST00000585121 SUPT3HO75486 399 aa11.66□□□□□ -0.54
SS18-225ENST00000585121 LTA4HP09960 611 aaKnown RBP11.66□□□□□ -0.54
SS18-225ENST00000585121 CTAGE8P0CG41 777 aa11.66□□□□□ -0.54
SS18-225ENST00000585121 RNH1P13489 461 aaKnown RBP11.66□□□□□ -0.54
SS18-225ENST00000585121 TFEBP19484 476 aa11.66□□□□□ -0.54
SS18-225ENST00000585121 HSPA7P48741 367 aa11.66□□□□□ -0.54
SS18-225ENST00000585121 OR4D2P58180 307 aa11.66□□□□□ -0.54
SS18-225ENST00000585121 NR6A1Q15406 480 aa11.66□□□□□ -0.54
SS18-225ENST00000585121 UAP1Q16222 522 aaPredicted RBP11.66□□□□□ -0.54
SS18-225ENST00000585121 PDK4Q16654 411 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms