RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 WDR74Q6RFH5 385 aaPredicted RBP23.93■■□□□ 1.42
SHMT1-207ENST00000580002 MCATQ8IVS2 390 aaKnown RBP23.93■■□□□ 1.42
SHMT1-207ENST00000580002 MIER2Q8N344 545 aa23.93■■□□□ 1.42
SHMT1-207ENST00000580002 TBC1D19Q8N5T2 526 aa23.93■■□□□ 1.42
SHMT1-207ENST00000580002 TRPV3Q8NET8 790 aa23.93■■□□□ 1.42
SHMT1-207ENST00000580002 NAT6Q93015 286 aa23.93■■□□□ 1.42
SHMT1-207ENST00000580002 TEFMQ96QE5 360 aaKnown RBP23.93■■□□□ 1.42
SHMT1-207ENST00000580002 SLC6A16Q9GZN6 736 aa23.93■■□□□ 1.42
SHMT1-207ENST00000580002 SOHLH2Q9NX45 425 aa23.93■■□□□ 1.42
SHMT1-207ENST00000580002 MN1Q10571 1320 aaPredicted RBP23.92■■□□□ 1.42
SHMT1-207ENST00000580002 ZFHX2Q9C0A1 2572 aaPredicted RBP23.92■■□□□ 1.42
SHMT1-207ENST00000580002 ARHGAP10A1A4S6 786 aa23.92■■□□□ 1.42
SHMT1-207ENST00000580002 FLRT2O43155 660 aa23.92■■□□□ 1.42
SHMT1-207ENST00000580002 LRATO95237 230 aa23.92■■□□□ 1.42
SHMT1-207ENST00000580002 ATP4BP51164 291 aa23.92■■□□□ 1.42
SHMT1-207ENST00000580002 ADPRMQ3LIE5 342 aa23.92■■□□□ 1.42
SHMT1-207ENST00000580002 ZNF793Q6ZN11 406 aa23.92■■□□□ 1.42
SHMT1-207ENST00000580002 DTWD1Q8N5C7 304 aa23.92■■□□□ 1.42
SHMT1-207ENST00000580002 FBXO27Q8NI29 283 aa23.92■■□□□ 1.42
SHMT1-207ENST00000580002 C17orf62Q9BQA9 187 aa23.92■■□□□ 1.42
SHMT1-207ENST00000580002 EPB41L1Q9H4G0 881 aa23.92■■□□□ 1.42
SHMT1-207ENST00000580002 CKMT2P17540 419 aa23.91■■□□□ 1.42
SHMT1-207ENST00000580002 TPP2P29144 1249 aaPredicted RBP23.91■■□□□ 1.42
SHMT1-207ENST00000580002 SMU1Q2TAY7 513 aa23.91■■□□□ 1.42
SHMT1-207ENST00000580002 TMEM71Q6P5X7 295 aa23.91■■□□□ 1.42
SHMT1-207ENST00000580002 CCDC121Q6ZUS5 278 aa23.91■■□□□ 1.42
SHMT1-207ENST00000580002 SNX32Q86XE0 403 aa23.91■■□□□ 1.42
SHMT1-207ENST00000580002 RCBTB1Q8NDN9 531 aa23.91■■□□□ 1.42
SHMT1-207ENST00000580002 ZCCHC10Q8TBK6 192 aa23.91■■□□□ 1.42
SHMT1-207ENST00000580002 TCTN2Q96GX1 697 aa23.91■■□□□ 1.42
SHMT1-207ENST00000580002 ASIC5Q9NY37 505 aa23.91■■□□□ 1.42
SHMT1-207ENST00000580002 RUVBL1Q9Y265 456 aaKnown RBP23.91■■□□□ 1.42
SHMT1-207ENST00000580002 ANKRD65E5RJM6 399 aa23.91■■□□□ 1.42
SHMT1-207ENST00000580002 ERI3O43414 337 aaKnown RBP23.91■■□□□ 1.42
SHMT1-207ENST00000580002 PCDH7O60245 1069 aa23.91■■□□□ 1.42
SHMT1-207ENST00000580002 DNAJB6O75190 326 aa23.91■■□□□ 1.42
SHMT1-207ENST00000580002 ANXA4P09525 319 aaPredicted RBP23.91■■□□□ 1.42
SHMT1-207ENST00000580002 SERPINB1P30740 379 aa23.91■■□□□ 1.42
SHMT1-207ENST00000580002 TIA1P31483 386 aaKnown RBP eCLIP23.91■■□□□ 1.42
SHMT1-207ENST00000580002 RAP1GDS1P52306 607 aa23.91■■□□□ 1.42
SHMT1-207ENST00000580002 STX1BP61266 288 aa23.91■■□□□ 1.42
SHMT1-207ENST00000580002 RELAQ04206 551 aa23.91■■□□□ 1.42
SHMT1-207ENST00000580002 KRT72Q14CN4 511 aa23.91■■□□□ 1.42
SHMT1-207ENST00000580002 PDCD4Q53EL6 469 aaKnown RBP23.91■■□□□ 1.42
SHMT1-207ENST00000580002 SPIN4Q56A73 249 aa23.91■■□□□ 1.42
SHMT1-207ENST00000580002 NAXDQ8IW45 347 aa23.91■■□□□ 1.42
SHMT1-207ENST00000580002 HOMEZQ8IX15 550 aa23.91■■□□□ 1.42
SHMT1-207ENST00000580002 MMP21Q8N119 569 aa23.91■■□□□ 1.42
SHMT1-207ENST00000580002 CDC26Q8NHZ8 85 aa23.91■■□□□ 1.42
SHMT1-207ENST00000580002 NT5CQ8TCD5 201 aa23.91■■□□□ 1.42
SHMT1-207ENST00000580002 NSL1Q96IY1 281 aa23.91■■□□□ 1.42
SHMT1-207ENST00000580002 AKAP10O43572 662 aa23.9■■□□□ 1.42
SHMT1-207ENST00000580002 ZNF888P0CJ79 500 aaPredicted RBP23.9■■□□□ 1.42
SHMT1-207ENST00000580002 COX4I1P13073 169 aa23.9■■□□□ 1.42
SHMT1-207ENST00000580002 MLLT3P42568 568 aaPredicted RBP23.9■■□□□ 1.42
SHMT1-207ENST00000580002 MAD2L1Q13257 205 aaPredicted RBP23.9■■□□□ 1.42
SHMT1-207ENST00000580002 SQSTM1Q13501 440 aa23.9■■□□□ 1.42
SHMT1-207ENST00000580002 AASDHQ4L235 1098 aaPredicted RBP23.9■■□□□ 1.42
SHMT1-207ENST00000580002 WASHC2DQ5SRD0 308 aa23.9■■□□□ 1.42
SHMT1-207ENST00000580002 ABHD17CQ6PCB6 329 aa23.9■■□□□ 1.42
SHMT1-207ENST00000580002 PRSS41Q7RTY9 318 aa23.9■■□□□ 1.42
SHMT1-207ENST00000580002 RGMAQ96B86 450 aa23.9■■□□□ 1.42
SHMT1-207ENST00000580002 RNF31Q96EP0 1072 aa23.9■■□□□ 1.42
SHMT1-207ENST00000580002 CD180Q99467 661 aa23.9■■□□□ 1.42
SHMT1-207ENST00000580002 PRDM7Q9NQW5 492 aa23.9■■□□□ 1.42
SHMT1-207ENST00000580002 NMRK1Q9NWW6 199 aa23.9■■□□□ 1.42
SHMT1-207ENST00000580002 FTSJ1Q9UET6 329 aa23.9■■□□□ 1.42
SHMT1-207ENST00000580002 TMED5Q9Y3A6 229 aa23.9■■□□□ 1.42
SHMT1-207ENST00000580002 DLL1O00548 723 aa23.89■■□□□ 1.42
SHMT1-207ENST00000580002 CBFA2T3O75081 653 aa23.89■■□□□ 1.42
SHMT1-207ENST00000580002 SLC22A3O75751 556 aa23.89■■□□□ 1.42
SHMT1-207ENST00000580002 MED26O95402 600 aa23.89■■□□□ 1.42
SHMT1-207ENST00000580002 ZBTB11O95625 1053 aaPredicted RBP23.89■■□□□ 1.42
SHMT1-207ENST00000580002 CPNE6O95741 557 aa23.89■■□□□ 1.42
SHMT1-207ENST00000580002 DUSP3P51452 185 aaPredicted RBP23.89■■□□□ 1.42
SHMT1-207ENST00000580002 OR4C11Q6IEV9 310 aa23.89■■□□□ 1.42
SHMT1-207ENST00000580002 GALNT18Q6P9A2 607 aa23.89■■□□□ 1.42
SHMT1-207ENST00000580002 CSNK1A1LQ8N752 337 aa23.89■■□□□ 1.42
SHMT1-207ENST00000580002 OR8K5Q8NH50 307 aa23.89■■□□□ 1.42
SHMT1-207ENST00000580002 UTP15Q8TED0 518 aaKnown RBP23.89■■□□□ 1.42
SHMT1-207ENST00000580002 UCN3Q969E3 161 aa23.89■■□□□ 1.42
SHMT1-207ENST00000580002 TMEM74Q96NL1 305 aa23.89■■□□□ 1.42
SHMT1-207ENST00000580002 SPRTNQ9H040 489 aaPredicted RBP23.89■■□□□ 1.42
SHMT1-207ENST00000580002 SLC52A3Q9NQ40 469 aa23.89■■□□□ 1.42
SHMT1-207ENST00000580002 SEMA5BQ9P283 1151 aa23.89■■□□□ 1.42
SHMT1-207ENST00000580002 EXO1Q9UQ84 846 aaKnown RBP23.89■■□□□ 1.42
SHMT1-207ENST00000580002 SCN3AQ9NY46 2000 aa23.89■■□□□ 1.41
SHMT1-207ENST00000580002 IGHV5-10-1A0A0J9YXX1 117 aa23.88■■□□□ 1.41
SHMT1-207ENST00000580002 GNG14A0A1W2PPG7 69 aa23.88■■□□□ 1.41
SHMT1-207ENST00000580002 TMPRSS11DO60235 418 aa23.88■■□□□ 1.41
SHMT1-207ENST00000580002 FOLR1P15328 257 aa23.88■■□□□ 1.41
SHMT1-207ENST00000580002 DGKQP52824 942 aa23.88■■□□□ 1.41
SHMT1-207ENST00000580002 MC1RQ01726 317 aa23.88■■□□□ 1.41
SHMT1-207ENST00000580002 PWP1Q13610 501 aa23.88■■□□□ 1.41
SHMT1-207ENST00000580002 GPR19Q15760 415 aa23.88■■□□□ 1.41
SHMT1-207ENST00000580002 CCDC157Q569K6 752 aa23.88■■□□□ 1.41
SHMT1-207ENST00000580002 RERGQ96A58 199 aaPredicted RBP23.88■■□□□ 1.41
SHMT1-207ENST00000580002 VPS33AQ96AX1 596 aa23.88■■□□□ 1.41
SHMT1-207ENST00000580002 THAP11Q96EK4 314 aa23.88■■□□□ 1.41
SHMT1-207ENST00000580002 PDE7BQ9NP56 450 aa23.88■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms