RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 CYC1P08574 325 aa22.57■■□□□ 1.2
SHMT1-206ENST00000579558 SERPINB8P50452 374 aa22.57■■□□□ 1.2
SHMT1-206ENST00000579558 IRF9Q00978 393 aa22.57■■□□□ 1.2
SHMT1-206ENST00000579558 PDK4Q16654 411 aa22.57■■□□□ 1.2
SHMT1-206ENST00000579558 TOR1AIP1Q5JTV8 583 aa22.57■■□□□ 1.2
SHMT1-206ENST00000579558 TMIGD1Q6UXZ0 262 aa22.57■■□□□ 1.2
SHMT1-206ENST00000579558 KBTBD2Q8IY47 623 aa22.57■■□□□ 1.2
SHMT1-206ENST00000579558 ZADH2Q8N4Q0 377 aa22.57■■□□□ 1.2
SHMT1-206ENST00000579558 TTLQ8NG68 377 aa22.57■■□□□ 1.2
SHMT1-206ENST00000579558 UTP15Q8TED0 518 aaKnown RBP22.57■■□□□ 1.2
SHMT1-206ENST00000579558 CREB3L4Q8TEY5 395 aa22.57■■□□□ 1.2
SHMT1-206ENST00000579558 MIB2Q96AX9 1013 aa22.57■■□□□ 1.2
SHMT1-206ENST00000579558 PEX11GQ96HA9 241 aa22.57■■□□□ 1.2
SHMT1-206ENST00000579558 ATOH8Q96SQ7 321 aa22.57■■□□□ 1.2
SHMT1-206ENST00000579558 RBCK1Q9BYM8 510 aa22.57■■□□□ 1.2
SHMT1-206ENST00000579558 UBXN8O00124 270 aa22.56■■□□□ 1.2
SHMT1-206ENST00000579558 SERPINA6P08185 405 aa22.56■■□□□ 1.2
SHMT1-206ENST00000579558 INHBAP08476 426 aa22.56■■□□□ 1.2
SHMT1-206ENST00000579558 IL10P22301 178 aa22.56■■□□□ 1.2
SHMT1-206ENST00000579558 RAB8AP61006 207 aa22.56■■□□□ 1.2
SHMT1-206ENST00000579558 HYAL2Q12891 473 aa22.56■■□□□ 1.2
SHMT1-206ENST00000579558 PCOLCEQ15113 449 aa22.56■■□□□ 1.2
SHMT1-206ENST00000579558 FAM83EQ2M2I3 478 aa22.56■■□□□ 1.2
SHMT1-206ENST00000579558 LRRC70Q7Z2Q7 622 aa22.56■■□□□ 1.2
SHMT1-206ENST00000579558 CENPLQ8N0S6 344 aaPredicted RBP22.56■■□□□ 1.2
SHMT1-206ENST00000579558 Q8NA96 180 aa22.56■■□□□ 1.2
SHMT1-206ENST00000579558 CPT1CQ8TCG5 803 aa22.56■■□□□ 1.2
SHMT1-206ENST00000579558 SLC44A1Q8WWI5 657 aa22.56■■□□□ 1.2
SHMT1-206ENST00000579558 OR1F2PQ96R84 312 aa22.56■■□□□ 1.2
SHMT1-206ENST00000579558 CD244Q9BZW8 370 aa22.56■■□□□ 1.2
SHMT1-206ENST00000579558 ZNF700Q9H0M5 742 aa22.56■■□□□ 1.2
SHMT1-206ENST00000579558 EHD1Q9H4M9 534 aa22.56■■□□□ 1.2
SHMT1-206ENST00000579558 KLHL31Q9H511 634 aa22.56■■□□□ 1.2
SHMT1-206ENST00000579558 C19orf25Q9UFG5 118 aaPredicted RBP22.56■■□□□ 1.2
SHMT1-206ENST00000579558 B3GNT3Q9Y2A9 372 aa22.56■■□□□ 1.2
SHMT1-206ENST00000579558 IKBKGQ9Y6K9 419 aa22.56■■□□□ 1.2
SHMT1-206ENST00000579558 A0A096LPK6 155 aa22.55■■□□□ 1.2
SHMT1-206ENST00000579558 TYK2P29597 1187 aa22.55■■□□□ 1.2
SHMT1-206ENST00000579558 OLR1P78380 273 aa22.55■■□□□ 1.2
SHMT1-206ENST00000579558 XKR6Q5GH73 641 aa22.55■■□□□ 1.2
SHMT1-206ENST00000579558 LANCL3Q6ZV70 420 aa22.55■■□□□ 1.2
SHMT1-206ENST00000579558 EFCAB3Q8N7B9 438 aa22.55■■□□□ 1.2
SHMT1-206ENST00000579558 CCT6BQ92526 530 aa22.55■■□□□ 1.2
SHMT1-206ENST00000579558 PITHD1Q9GZP4 211 aaPredicted RBP22.55■■□□□ 1.2
SHMT1-206ENST00000579558 NT5DC2Q9H857 520 aa22.55■■□□□ 1.2
SHMT1-206ENST00000579558 COPG2Q9UBF2 871 aa22.55■■□□□ 1.2
SHMT1-206ENST00000579558 NFU1Q9UMS0 254 aa22.55■■□□□ 1.2
SHMT1-206ENST00000579558 ASB1Q9Y576 335 aa22.55■■□□□ 1.2
SHMT1-206ENST00000579558 OR2W5A6NFC9 320 aa22.54■■□□□ 1.2
SHMT1-206ENST00000579558 SYCE1LA8MT33 242 aa22.54■■□□□ 1.2
SHMT1-206ENST00000579558 CHST10O43529 356 aa22.54■■□□□ 1.2
SHMT1-206ENST00000579558 PRAMEF4O60810 478 aa22.54■■□□□ 1.2
SHMT1-206ENST00000579558 DNAJB6O75190 326 aa22.54■■□□□ 1.2
SHMT1-206ENST00000579558 CDC123O75794 336 aaPredicted RBP22.54■■□□□ 1.2
SHMT1-206ENST00000579558 ALDOAP04075 364 aaKnown RBP22.54■■□□□ 1.2
SHMT1-206ENST00000579558 SERPINA7P05543 415 aa22.54■■□□□ 1.2
SHMT1-206ENST00000579558 PRR35P0CG20 571 aa22.54■■□□□ 1.2
SHMT1-206ENST00000579558 GSTM2P28161 218 aa22.54■■□□□ 1.2
SHMT1-206ENST00000579558 GLRBP48167 497 aa22.54■■□□□ 1.2
SHMT1-206ENST00000579558 STXBP1P61764 594 aaKnown RBP22.54■■□□□ 1.2
SHMT1-206ENST00000579558 DOC2AQ14183 400 aa22.54■■□□□ 1.2
SHMT1-206ENST00000579558 PLEKHN1Q494U1 663 aaPredicted RBP22.54■■□□□ 1.2
SHMT1-206ENST00000579558 PRAMEF9Q5VWM5 478 aa22.54■■□□□ 1.2
SHMT1-206ENST00000579558 TAOK1Q7L7X3 1001 aa22.54■■□□□ 1.2
SHMT1-206ENST00000579558 CPEB2Q7Z5Q1 589 aaKnown RBP22.54■■□□□ 1.2
SHMT1-206ENST00000579558 IFT20Q8IY31 132 aa22.54■■□□□ 1.2
SHMT1-206ENST00000579558 RHEBL1Q8TAI7 183 aa22.54■■□□□ 1.2
SHMT1-206ENST00000579558 UHMK1Q8TAS1 419 aaKnown RBP22.54■■□□□ 1.2
SHMT1-206ENST00000579558 PTCD3Q96EY7 689 aaKnown RBP22.54■■□□□ 1.2
SHMT1-206ENST00000579558 PAFAH2Q99487 392 aa22.54■■□□□ 1.2
SHMT1-206ENST00000579558 ILKAPQ9H0C8 392 aaPredicted RBP22.54■■□□□ 1.2
SHMT1-206ENST00000579558 VPS11Q9H270 941 aa22.54■■□□□ 1.2
SHMT1-206ENST00000579558 EPS8L2Q9H6S3 715 aa22.54■■□□□ 1.2
SHMT1-206ENST00000579558 ANKDD1BA6NHY2 528 aa22.53■■□□□ 1.2
SHMT1-206ENST00000579558 KLHL2O95198 593 aa22.53■■□□□ 1.2
SHMT1-206ENST00000579558 FHP07954 510 aa22.53■■□□□ 1.2
SHMT1-206ENST00000579558 SMIM10L1P0DMW3 83 aa22.53■■□□□ 1.2
SHMT1-206ENST00000579558 AGTR2P50052 363 aa22.53■■□□□ 1.2
SHMT1-206ENST00000579558 SERPINB9P50453 376 aa22.53■■□□□ 1.2
SHMT1-206ENST00000579558 IRF8Q02556 426 aa22.53■■□□□ 1.2
SHMT1-206ENST00000579558 ACAP2Q15057 778 aa22.53■■□□□ 1.2
SHMT1-206ENST00000579558 KLC3Q6P597 504 aa22.53■■□□□ 1.2
SHMT1-206ENST00000579558 IGFL2Q6UWQ7 119 aa22.53■■□□□ 1.2
SHMT1-206ENST00000579558 ISLR2Q6UXK2 745 aa22.53■■□□□ 1.2
SHMT1-206ENST00000579558 ATCAYQ86WG3 371 aa22.53■■□□□ 1.2
SHMT1-206ENST00000579558 UBTD2Q8WUN7 234 aa22.53■■□□□ 1.2
SHMT1-206ENST00000579558 TBC1D20Q96BZ9 403 aa22.53■■□□□ 1.2
SHMT1-206ENST00000579558 WDR34Q96EX3 536 aa22.53■■□□□ 1.2
SHMT1-206ENST00000579558 SMIM10Q96HG1 83 aa22.53■■□□□ 1.2
SHMT1-206ENST00000579558 SEC16BQ96JE7 1060 aa22.53■■□□□ 1.2
SHMT1-206ENST00000579558 WDR77Q9BQA1 342 aaPredicted RBP22.53■■□□□ 1.2
SHMT1-206ENST00000579558 TUBB6Q9BUF5 446 aa22.53■■□□□ 1.2
SHMT1-206ENST00000579558 EFCAB11Q9BUY7 163 aa22.53■■□□□ 1.2
SHMT1-206ENST00000579558 AICDAQ9GZX7 198 aa22.53■■□□□ 1.2
SHMT1-206ENST00000579558 LANCL2Q9NS86 450 aa22.53■■□□□ 1.2
SHMT1-206ENST00000579558 OPTCQ9UBM4 332 aa22.53■■□□□ 1.2
SHMT1-206ENST00000579558 MYO18BQ8IUG5 2567 aa22.53■■□□□ 1.2
SHMT1-206ENST00000579558 NBASA2RRP1 2371 aa22.52■■□□□ 1.2
SHMT1-206ENST00000579558 A0A087WUV0 522 aaPredicted RBP22.52■■□□□ 1.2
SHMT1-206ENST00000579558 IGHV3-20A0A0C4DH32 117 aa22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms