RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 TIMM29Q9BSF4 260 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 SPATA5L1Q9BVQ7 753 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 C1QTNF2Q9BXJ5 285 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 POPDC3Q9HBV1 291 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 OR6C2Q9NZP2 312 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 PHF11Q9UIL8 331 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 OR51B4Q9Y5P0 310 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 SNX11Q9Y5W9 270 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 SCN5AQ14524 2016 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 LOXHD1Q8IVV2 1947 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 GREB1LQ9C091 1923 aaPredicted RBP8.87□□□□□ -0.99
VPS39-205ENST00000562258 C1orf105O95561 183 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 ERVPABLB-1P60509 514 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 KCNJ2P63252 427 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 PLGLB1Q02325 96 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 PPP1R8Q12972 351 aaKnown RBP8.87□□□□□ -0.99
VPS39-205ENST00000562258 NRF1Q16656 503 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 SPIN4Q56A73 249 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 HENMT1Q5T8I9 393 aaKnown RBP8.87□□□□□ -0.99
VPS39-205ENST00000562258 GLYATQ6IB77 296 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 SLC2A7Q6PXP3 512 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 PPP1R3BQ86XI6 285 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 RELL1Q8IUW5 271 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 KRTCAP2Q8N6L1 136 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 C11orf65Q8NCR3 313 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 RBM15BQ8NDT2 890 aaKnown RBP8.87□□□□□ -0.99
VPS39-205ENST00000562258 OR4K14Q8NGD5 310 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 CEP76Q8TAP6 659 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 COL21A1Q96P44 957 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 CCT7Q99832 543 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 FNDC11Q9BVV2 318 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 UGT2B28Q9BY64 529 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 SSU72Q9NP77 194 aaKnown RBP8.87□□□□□ -0.99
VPS39-205ENST00000562258 ANAPC2Q9UJX6 822 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 PTRH2Q9Y3E5 179 aaKnown RBP8.87□□□□□ -0.99
VPS39-205ENST00000562258 ROS1P08922 2347 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 EFCAB7A8K855 629 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 TYROBPO43914 113 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 KCNJ13O60928 360 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 ENTPD5O75356 428 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 FGF3P11487 239 aaPredicted RBP8.87□□□□□ -0.99
VPS39-205ENST00000562258 PEX19P40855 299 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 KCNC1P48547 511 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 NRG3P56975 720 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 OR4D2P58180 307 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 GSTA3Q16772 222 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 SPPL2CQ8IUH8 684 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 SAMD14Q8IZD0 417 aaPredicted RBP8.87□□□□□ -0.99
VPS39-205ENST00000562258 PHTF2Q8N3S3 785 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 DENND6BQ8NEG7 585 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 MIEF2Q96C03 454 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 ALG14Q96F25 216 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 MRGPRX3Q96LB0 322 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 KCNC2Q96PR1 638 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 RIBC2Q9H4K1 309 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 TMEM9BQ9NQ34 198 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 KLRF1Q9NZS2 232 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 HNRNPCL2B2RXH8 293 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 C6orf47O95873 294 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 B3GALT4O96024 378 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 RPS3P23396 243 aaKnown RBP eCLIP8.87□□□□□ -0.99
VPS39-205ENST00000562258 GRK6P43250 576 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 TAS2R41P59536 307 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 LIPEQ05469 1076 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 KHDC1Q4VXA5 237 aaKnown RBP8.87□□□□□ -0.99
VPS39-205ENST00000562258 LETMD1Q6P1Q0 360 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 ZDHHC13Q8IUH4 622 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 DTWD2Q8NBA8 298 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 ASB11Q8WXH4 323 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 DACT3Q96B18 629 aaPredicted RBP8.87□□□□□ -0.99
VPS39-205ENST00000562258 OR6C1Q96RD1 312 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 ZNF382Q96SR6 550 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 SLC35A5Q9BS91 424 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 RPF2Q9H7B2 306 aaKnown RBP8.87□□□□□ -0.99
VPS39-205ENST00000562258 SAR1AQ9NR31 198 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 DNAAF2Q9NVR5 837 aaKnown RBP8.87□□□□□ -0.99
VPS39-205ENST00000562258 SUCOQ9UBS9 1254 aaKnown RBP8.87□□□□□ -0.99
VPS39-205ENST00000562258 RIMKLBQ9ULI2 386 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 SAMHD1Q9Y3Z3 626 aaKnown RBP8.87□□□□□ -0.99
VPS39-205ENST00000562258 HS3ST3A1Q9Y663 406 aa8.87□□□□□ -0.99
VPS39-205ENST00000562258 CLIC1O00299 241 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 SLC16A5O15375 505 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 PEX1O43933 1283 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 IGHA2P01877 340 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 PGRP06401 933 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 CHRNB1P11230 501 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 MAGEA6P43360 314 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 CCT3P49368 545 aaKnown RBP8.86□□□□□ -0.99
VPS39-205ENST00000562258 MTTPP55157 894 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 ZNF763Q0D2J5 394 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 LARS2Q15031 903 aaKnown RBP8.86□□□□□ -0.99
VPS39-205ENST00000562258 METTL21CQ5VZV1 264 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 DHRS13Q6UX07 377 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 CYS1Q717R9 158 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 OR7A2PQ8NGA2 310 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 OR9A4Q8NGU2 314 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 GPR150Q8NGU9 434 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 OR6Y1Q8NGX8 325 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 LPAR4Q99677 370 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 CCDC28BQ9BUN5 200 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms