RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 L3HYPDHQ96EM0 354 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 FAM129BQ96TA1 746 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 ERVK-6Q9BXR3 956 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 BARHL1Q9BZE3 327 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 GORASP2Q9H8Y8 452 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 IL20Q9NYY1 176 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 RIMKLBQ9ULI2 386 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 NOSIPQ9Y314 301 aaKnown RBP12.82□□□□□ -0.36
CLK3-206ENST00000562078 INSL6Q9Y581 213 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 ZFP37Q9Y6Q3 630 aaPredicted RBP12.82□□□□□ -0.36
CLK3-206ENST00000562078 FAM25EA8MYX2 175 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 PLA2G10O15496 165 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 WDR47O94967 919 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 ATXN1LP0C7T5 689 aaKnown RBP12.82□□□□□ -0.36
CLK3-206ENST00000562078 HOXD9P28356 352 aaPredicted RBP12.82□□□□□ -0.36
CLK3-206ENST00000562078 HOXA9P31269 272 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 ARSDP51689 593 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 POU4F1Q01851 419 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 VEPH1Q14D04 833 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 PROX2Q3B8N5 592 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 CARD16Q5EG05 197 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 DDX53Q86TM3 631 aaKnown RBP12.82□□□□□ -0.36
CLK3-206ENST00000562078 AUTS2Q8WXX7 1259 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 TADA1Q96BN2 335 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 GFM1Q96RP9 751 aaKnown RBP12.82□□□□□ -0.36
CLK3-206ENST00000562078 CYP2S1Q96SQ9 504 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 HTATIP2Q9BUP3 242 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 TRIM45Q9H8W5 580 aaPredicted RBP12.82□□□□□ -0.36
CLK3-206ENST00000562078 PDFQ9HBH1 243 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 KCTD3Q9Y597 815 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 ZNF840PA6NDX5 716 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 PRR23AA6NEV1 266 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 OR51F1A6NGY5 319 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 PAHP00439 452 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 FCER2P06734 321 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 IRF1P10914 325 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 SSTR4P31391 388 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 SLC11A2P49281 568 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 SGSHP51688 502 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 HTRA4P83105 476 aaPredicted RBP12.81□□□□□ -0.36
CLK3-206ENST00000562078 PLD1Q13393 1074 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 ZNF273Q14593 569 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 GPR68Q15743 365 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 ATP6AP1LQ52LC2 224 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 HECTD3Q5T447 861 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 GPR158Q5T848 1215 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 CPZQ66K79 652 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 LDB1Q86U70 411 aaPredicted RBP12.81□□□□□ -0.36
CLK3-206ENST00000562078 TMEM151BQ8IW70 566 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 GPALPP1Q8IXQ4 340 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 ENTHD1Q8IYW4 607 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 OR6P1Q8NGX9 317 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 SH3RF2Q8TEC5 729 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 GPR137Q96N19 417 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 MS4A7Q9GZW8 240 aaPredicted RBP12.81□□□□□ -0.36
CLK3-206ENST00000562078 SLC6A17Q9H1V8 727 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 ELOVL6Q9H5J4 265 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 C3orf14Q9HBI5 128 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 TAS2R16Q9NYV7 291 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 NEUROG3Q9Y4Z2 214 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 HRH3Q9Y5N1 445 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 CLCA3PQ9Y6N3 262 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 A0A075B6Q4 140 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 RPS10-NUDT3A0A1W2PQS6 291 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 FGF18O76093 207 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 FGF4P08620 206 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 PIRTP0C851 137 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 HMGA1P17096 107 aaKnown RBP12.81□□□□□ -0.36
CLK3-206ENST00000562078 CD72P21854 359 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 CORO1AP31146 461 aaKnown RBP12.81□□□□□ -0.36
CLK3-206ENST00000562078 TPMTP51580 245 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 DGKQP52824 942 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 ELP6Q0PNE2 266 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 MAB21L1Q13394 359 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 KCNC3Q14003 757 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.81□□□□□ -0.36
CLK3-206ENST00000562078 PLET1Q6UQ28 207 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 TMEM207Q6UWW9 146 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 FAM131AQ6UXB0 335 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 ZNF782Q6ZMW2 699 aaPredicted RBP12.81□□□□□ -0.36
CLK3-206ENST00000562078 ZNF600Q6ZNG1 722 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 ABI3BPQ7Z7G0 1075 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 TSPYL5Q86VY4 417 aaPredicted RBP12.81□□□□□ -0.36
CLK3-206ENST00000562078 PTGR2Q8N8N7 351 aaPredicted RBP12.81□□□□□ -0.36
CLK3-206ENST00000562078 PROKR1Q8TCW9 393 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 SPON2Q9BUD6 331 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 SAV1Q9H4B6 383 aaPredicted RBP12.81□□□□□ -0.36
CLK3-206ENST00000562078 IKZF5Q9H5V7 419 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 MRPL17Q9NRX2 175 aaKnown RBP12.81□□□□□ -0.36
CLK3-206ENST00000562078 GKN1Q9NS71 199 aa12.81□□□□□ -0.36
CLK3-206ENST00000562078 LOC285095A0A1B0GVY8 99 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 UBA6A0AVT1 1052 aaPredicted RBP12.8□□□□□ -0.36
CLK3-206ENST00000562078 MROH6A6NGR9 719 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 MYO1GB0I1T2 1018 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 RFPL3O75679 317 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 KLKB1P03952 638 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 RPS19P39019 145 aaKnown RBP12.8□□□□□ -0.36
CLK3-206ENST00000562078 HAAOP46952 286 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 NUDT6P53370 316 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 ERVK-21P61565 698 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms