RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 CXCR6O00574 342 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 ADAMDEC1O15204 470 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 SLC31A1O15431 190 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 CLOCKO15516 846 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 PDPK1O15530 556 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 NDUFS4O43181 175 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 NDUFS2O75306 463 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 RASAL1O95294 804 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 VIPP01282 170 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 FURINP09958 794 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 GABRG2P18507 467 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 UQCRC2P22695 453 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 PEX2P28328 305 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 TLX1P31314 330 aaPredicted RBP7.2□□□□□ -1.26
VPS39-204ENST00000561818 PCGF2P35227 344 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 BUD31P41223 144 aaPredicted RBP7.2□□□□□ -1.26
VPS39-204ENST00000561818 SSR2P43308 183 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 RPS9P46781 194 aaKnown RBP7.2□□□□□ -1.26
VPS39-204ENST00000561818 NEK2P51955 445 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 CHN2P52757 468 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 DGKQP52824 942 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 RAD23AP54725 363 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 STARD6P59095 220 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 IL18R1Q13478 541 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 FGL2Q14314 439 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 SUZ12Q15022 739 aaKnown RBP7.2□□□□□ -1.26
VPS39-204ENST00000561818 ELOCQ15369 112 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 SKIV2LQ15477 1246 aaKnown RBP7.2□□□□□ -1.26
VPS39-204ENST00000561818 SF1Q15637 639 aaKnown RBP7.2□□□□□ -1.26
VPS39-204ENST00000561818 VMACQ2NL98 169 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 ADPRMQ3LIE5 342 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 RABL3Q5HYI8 236 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 PRAMEF8Q5VWM4 474 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 PRAMEF7Q5VXH5 474 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 TTC23Q5W5X9 447 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 FAM71E1Q6IPT2 247 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 ARMC6Q6NXE6 501 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 TLDC1Q6P9B6 456 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 FAM83HQ6ZRV2 1179 aaPredicted RBP7.2□□□□□ -1.26
VPS39-204ENST00000561818 ZNF621Q6ZSS3 439 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 ABHD13Q7L211 337 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 ADCK2Q7Z695 626 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 PATL1Q86TB9 770 aaKnown RBP7.2□□□□□ -1.26
VPS39-204ENST00000561818 IFNEQ86WN2 208 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 GKN2Q86XP6 184 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 SPPL2CQ8IUH8 684 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 LILRA3Q8N6C8 439 aaPredicted RBP7.2□□□□□ -1.26
VPS39-204ENST00000561818 RNF148Q8N7C7 305 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 TMEM102Q8N9M5 508 aaPredicted RBP7.2□□□□□ -1.26
VPS39-204ENST00000561818 MFSD9Q8NBP5 474 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 CAMKVQ8NCB2 501 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 OR2L5Q8NG80 312 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 OR2L3Q8NG85 312 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 OR52N2Q8NGI0 321 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 OR52E1Q8NGJ3 308 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 OR4A15Q8NGL6 344 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 OR10A6Q8NH74 314 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.2□□□□□ -1.26
VPS39-204ENST00000561818 NT5CQ8TCD5 201 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 PNPT1Q8TCS8 783 aaKnown RBP7.2□□□□□ -1.26
VPS39-204ENST00000561818 SFXN5Q8TD22 340 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 GPBAR1Q8TDU6 330 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 CANT1Q8WVQ1 401 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 EZH1Q92800 747 aaPredicted RBP7.2□□□□□ -1.26
VPS39-204ENST00000561818 GAL3ST3Q96A11 431 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 RERGQ96A58 199 aaPredicted RBP7.2□□□□□ -1.26
VPS39-204ENST00000561818 MTFMTQ96DP5 389 aaKnown RBP7.2□□□□□ -1.26
VPS39-204ENST00000561818 ZNF583Q96ND8 569 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 RBM4BQ9BQ04 359 aaKnown RBP7.2□□□□□ -1.26
VPS39-204ENST00000561818 SLC39A3Q9BRY0 314 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 RPP25Q9BUL9 199 aaKnown RBP7.2□□□□□ -1.26
VPS39-204ENST00000561818 MENTQ9BUN1 341 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 RBM4Q9BWF3 364 aaKnown RBP7.2□□□□□ -1.26
VPS39-204ENST00000561818 LGR4Q9BXB1 951 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 PCDHAC1Q9H158 963 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 TPT1P8Q9HAU6 139 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 SERHLQ9NQF3 203 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 AASDHPPTQ9NRN7 309 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 GPR27Q9NS67 375 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 CALML5Q9NZT1 146 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 VAPAQ9P0L0 249 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 SH3BP4Q9P0V3 963 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 GIMAP2Q9UG22 337 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 SLC23A2Q9UGH3 650 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 LIMD1Q9UGP4 676 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 EBF1Q9UH73 591 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 MBD1Q9UIS9 605 aaPredicted RBP7.2□□□□□ -1.26
VPS39-204ENST00000561818 BLOC1S6Q9UL45 172 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 ENTPD4Q9Y227 616 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 PCDHB14Q9Y5E9 798 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 F5P12259 2224 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 ANKRD12Q6UB98 2062 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 SPTY2D1-AS1A0A0U1RR47 76 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 A0A1W2PRB8 838 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 TCRBV5S2A0A599 114 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 PRR23AA6NEV1 266 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 A8MVJ9 347 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 GNGT2O14610 69 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 TNFSF14O43557 240 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 OR1F1O43749 312 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms