RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 CUTCQ9NTM9 273 aa8.8□□□□□ -1
LDLR-210ENST00000559340 RIC8BQ9NVN3 520 aa8.8□□□□□ -1
LDLR-210ENST00000559340 NDOR1Q9UHB4 597 aa8.8□□□□□ -1
LDLR-210ENST00000559340 RUVBL1Q9Y265 456 aaKnown RBP8.8□□□□□ -1
LDLR-210ENST00000559340 ACACAQ13085 2346 aa8.79□□□□□ -1
LDLR-210ENST00000559340 LRIT2A6NDA9 550 aa8.79□□□□□ -1
LDLR-210ENST00000559340 TRPC5OSA6NMA1 111 aa8.79□□□□□ -1
LDLR-210ENST00000559340 C1QTNF9BB2RNN3 333 aa8.79□□□□□ -1
LDLR-210ENST00000559340 UBFD1O14562 309 aaKnown RBP8.79□□□□□ -1
LDLR-210ENST00000559340 SNNO75324 88 aaPredicted RBP8.79□□□□□ -1
LDLR-210ENST00000559340 VPS4BO75351 444 aa8.79□□□□□ -1
LDLR-210ENST00000559340 MYO1DO94832 1006 aa8.79□□□□□ -1
LDLR-210ENST00000559340 SEMA3DO95025 777 aa8.79□□□□□ -1
LDLR-210ENST00000559340 TGFB1P01137 390 aa8.79□□□□□ -1
LDLR-210ENST00000559340 PDYNP01213 254 aa8.79□□□□□ -1
LDLR-210ENST00000559340 CHRNGP07510 517 aa8.79□□□□□ -1
LDLR-210ENST00000559340 C1QTNF9P0C862 333 aa8.79□□□□□ -1
LDLR-210ENST00000559340 PCSK2P16519 638 aa8.79□□□□□ -1
LDLR-210ENST00000559340 ALOX12P18054 663 aa8.79□□□□□ -1
LDLR-210ENST00000559340 ITIH1P19827 911 aa8.79□□□□□ -1
LDLR-210ENST00000559340 ALAS2P22557 587 aa8.79□□□□□ -1
LDLR-210ENST00000559340 MDH1P40925 334 aaKnown RBP8.79□□□□□ -1
LDLR-210ENST00000559340 ETV5P41161 510 aa8.79□□□□□ -1
LDLR-210ENST00000559340 TSFMP43897 325 aaKnown RBP8.79□□□□□ -1
LDLR-210ENST00000559340 RPS13P62277 151 aaKnown RBP8.79□□□□□ -1
LDLR-210ENST00000559340 CYP4F2P78329 520 aa8.79□□□□□ -1
LDLR-210ENST00000559340 ABHD18Q0P651 414 aa8.79□□□□□ -1
LDLR-210ENST00000559340 SGO1Q5FBB7 561 aa8.79□□□□□ -1
LDLR-210ENST00000559340 KHDRBS2Q5VWX1 349 aaKnown RBP8.79□□□□□ -1
LDLR-210ENST00000559340 RHBDD2Q6NTF9 364 aa8.79□□□□□ -1
LDLR-210ENST00000559340 PWWP2BQ6NUJ5 590 aa8.79□□□□□ -1
LDLR-210ENST00000559340 TMEM214Q6NUQ4 689 aaKnown RBP8.79□□□□□ -1
LDLR-210ENST00000559340 C6orf15Q6UXA7 325 aaPredicted RBP8.79□□□□□ -1
LDLR-210ENST00000559340 WDR75Q8IWA0 830 aaKnown RBP8.79□□□□□ -1
LDLR-210ENST00000559340 ESX1Q8N693 406 aa8.79□□□□□ -1
LDLR-210ENST00000559340 OR2L5Q8NG80 312 aa8.79□□□□□ -1
LDLR-210ENST00000559340 MOCOSQ96EN8 888 aa8.79□□□□□ -1
LDLR-210ENST00000559340 C7orf26Q96N11 449 aa8.79□□□□□ -1
LDLR-210ENST00000559340 KCNC2Q96PR1 638 aa8.79□□□□□ -1
LDLR-210ENST00000559340 MTERF1Q99551 399 aaKnown RBP8.79□□□□□ -1
LDLR-210ENST00000559340 CTRCQ99895 268 aa8.79□□□□□ -1
LDLR-210ENST00000559340 ULBP3Q9BZM4 244 aa8.79□□□□□ -1
LDLR-210ENST00000559340 SHCBP1LQ9BZQ2 653 aa8.79□□□□□ -1
LDLR-210ENST00000559340 SLC6A16Q9GZN6 736 aa8.79□□□□□ -1
LDLR-210ENST00000559340 REXO4Q9GZR2 422 aaKnown RBP8.79□□□□□ -1
LDLR-210ENST00000559340 COPS7BQ9H9Q2 264 aaPredicted RBP8.79□□□□□ -1
LDLR-210ENST00000559340 DMRT3Q9NQL9 472 aa8.79□□□□□ -1
LDLR-210ENST00000559340 VPS29Q9UBQ0 182 aa8.79□□□□□ -1
LDLR-210ENST00000559340 GPN3Q9UHW5 284 aaPredicted RBP8.79□□□□□ -1
LDLR-210ENST00000559340 ZDHHC2Q9UIJ5 367 aa8.79□□□□□ -1
LDLR-210ENST00000559340 HAO1Q9UJM8 370 aa8.79□□□□□ -1
LDLR-210ENST00000559340 ZNF225Q9UK10 706 aa8.79□□□□□ -1
LDLR-210ENST00000559340 PADI1Q9ULC6 663 aa8.79□□□□□ -1
LDLR-210ENST00000559340 ZMIZ1Q9ULJ6 1067 aa8.79□□□□□ -1
LDLR-210ENST00000559340 WASF3Q9UPY6 502 aa8.79□□□□□ -1
LDLR-210ENST00000559340 FIS1Q9Y3D6 152 aa8.79□□□□□ -1
LDLR-210ENST00000559340 TMEM184BQ9Y519 407 aaPredicted RBP8.79□□□□□ -1
LDLR-210ENST00000559340 TIMM22Q9Y584 194 aa8.79□□□□□ -1
LDLR-210ENST00000559340 B3GALT1Q9Y5Z6 326 aa8.79□□□□□ -1
LDLR-210ENST00000559340 SPACA6W5XKT8 324 aa8.79□□□□□ -1
LDLR-210ENST00000559340 URB1O60287 2271 aaKnown RBP8.78□□□□□ -1
LDLR-210ENST00000559340 A0A1B0GX78 115 aa8.78□□□□□ -1
LDLR-210ENST00000559340 ARHGAP10A1A4S6 786 aa8.78□□□□□ -1
LDLR-210ENST00000559340 MAGEB17A8MXT2 336 aa8.78□□□□□ -1
LDLR-210ENST00000559340 C9J4A7 227 aa8.78□□□□□ -1
LDLR-210ENST00000559340 H0YIG0 161 aa8.78□□□□□ -1
LDLR-210ENST00000559340 STMND1H3BQB6 276 aa8.78□□□□□ -1
LDLR-210ENST00000559340 ERI3O43414 337 aaKnown RBP8.78□□□□□ -1
LDLR-210ENST00000559340 ITM2AO43736 263 aa8.78□□□□□ -1
LDLR-210ENST00000559340 B3GALT2O43825 422 aa8.78□□□□□ -1
LDLR-210ENST00000559340 NRP2O60462 931 aa8.78□□□□□ -1
LDLR-210ENST00000559340 GUCY1B2O75343 617 aa8.78□□□□□ -1
LDLR-210ENST00000559340 LYPLA1O75608 230 aaPredicted RBP8.78□□□□□ -1
LDLR-210ENST00000559340 STK17BO94768 372 aa8.78□□□□□ -1
LDLR-210ENST00000559340 KIAA0754O94854 1291 aa8.78□□□□□ -1
LDLR-210ENST00000559340 NSA2O95478 260 aaKnown RBP8.78□□□□□ -1
LDLR-210ENST00000559340 NTRK1P04629 796 aa8.78□□□□□ -1
LDLR-210ENST00000559340 IL10P22301 178 aa8.78□□□□□ -1
LDLR-210ENST00000559340 SERPINB3P29508 390 aa8.78□□□□□ -1
LDLR-210ENST00000559340 SLC5A2P31639 672 aa8.78□□□□□ -1
LDLR-210ENST00000559340 CCR10P46092 362 aa8.78□□□□□ -1
LDLR-210ENST00000559340 NEK2P51955 445 aa8.78□□□□□ -1
LDLR-210ENST00000559340 MTTPP55157 894 aa8.78□□□□□ -1
LDLR-210ENST00000559340 DCDP81605 110 aaKnown RBP8.78□□□□□ -1
LDLR-210ENST00000559340 OCRLQ01968 901 aa8.78□□□□□ -1
LDLR-210ENST00000559340 CAMK2BQ13554 666 aa8.78□□□□□ -1
LDLR-210ENST00000559340 HKDC1Q2TB90 917 aa8.78□□□□□ -1
LDLR-210ENST00000559340 ADPRMQ3LIE5 342 aa8.78□□□□□ -1
LDLR-210ENST00000559340 KANK2Q63ZY3 851 aa8.78□□□□□ -1
LDLR-210ENST00000559340 TTLL10Q6ZVT0 673 aa8.78□□□□□ -1
LDLR-210ENST00000559340 TRIM46Q7Z4K8 759 aa8.78□□□□□ -1
LDLR-210ENST00000559340 PARP9Q8IXQ6 854 aa8.78□□□□□ -1
LDLR-210ENST00000559340 DDIASQ8IXT1 998 aa8.78□□□□□ -1
LDLR-210ENST00000559340 C7orf57Q8NEG2 295 aa8.78□□□□□ -1
LDLR-210ENST00000559340 PIWIL2Q8TC59 973 aaKnown RBP8.78□□□□□ -1
LDLR-210ENST00000559340 UTP15Q8TED0 518 aaKnown RBP8.78□□□□□ -1
LDLR-210ENST00000559340 TWIST2Q8WVJ9 160 aa8.78□□□□□ -1
LDLR-210ENST00000559340 COL26A1Q96A83 441 aa8.78□□□□□ -1
LDLR-210ENST00000559340 MS4A6EQ96DS6 147 aa8.78□□□□□ -1
LDLR-210ENST00000559340 PRR11Q96HE9 360 aaPredicted RBP8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms