RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 FIBINQ8TAL6 211 aa14.46□□□□□ -0.09
USP28-214ENST00000545540 ASZ1Q8WWH4 475 aa14.46□□□□□ -0.09
USP28-214ENST00000545540 TPK1Q9H3S4 243 aa14.46□□□□□ -0.09
USP28-214ENST00000545540 STOML2Q9UJZ1 356 aa14.46□□□□□ -0.09
USP28-214ENST00000545540 LYVE1Q9Y5Y7 322 aa14.46□□□□□ -0.09
USP28-214ENST00000545540 AGAP14A8MT82 685 aa14.46□□□□□ -0.1
USP28-214ENST00000545540 NUAK1O60285 661 aa14.46□□□□□ -0.1
USP28-214ENST00000545540 ACRP10323 421 aa14.46□□□□□ -0.1
USP28-214ENST00000545540 IDSP22304 550 aa14.46□□□□□ -0.1
USP28-214ENST00000545540 IMPA1P29218 277 aa14.46□□□□□ -0.1
USP28-214ENST00000545540 NTHL1P78549 312 aa14.46□□□□□ -0.1
USP28-214ENST00000545540 SRSF11Q05519 484 aaKnown RBP14.46□□□□□ -0.1
USP28-214ENST00000545540 DBPQ10586 325 aaPredicted RBP14.46□□□□□ -0.1
USP28-214ENST00000545540 ACOX1Q15067 660 aa14.46□□□□□ -0.1
USP28-214ENST00000545540 LYPLAL1Q5VWZ2 237 aa14.46□□□□□ -0.1
USP28-214ENST00000545540 ZNF783Q6ZMS7 281 aa14.46□□□□□ -0.1
USP28-214ENST00000545540 WDR53Q7Z5U6 358 aaPredicted RBP14.46□□□□□ -0.1
USP28-214ENST00000545540 NPAS3Q8IXF0 933 aa14.46□□□□□ -0.1
USP28-214ENST00000545540 STX19Q8N4C7 294 aa14.46□□□□□ -0.1
USP28-214ENST00000545540 RAB8BQ92930 207 aa14.46□□□□□ -0.1
USP28-214ENST00000545540 ABHD8Q96I13 439 aa14.46□□□□□ -0.1
USP28-214ENST00000545540 SLC35A5Q9BS91 424 aa14.46□□□□□ -0.1
USP28-214ENST00000545540 C11orf16Q9NQ32 467 aa14.46□□□□□ -0.1
USP28-214ENST00000545540 MS4A12Q9NXJ0 267 aa14.46□□□□□ -0.1
USP28-214ENST00000545540 ASIC5Q9NY37 505 aa14.46□□□□□ -0.1
USP28-214ENST00000545540 CHD9Q3L8U1 2897 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 PRAMEF33A0A0G2JMD5 474 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 A6NL46 340 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 H3BM21 787 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 AQP9O43315 295 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 PRAMEF10O60809 474 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 NME6O75414 186 aaPredicted RBP14.45□□□□□ -0.1
USP28-214ENST00000545540 APOL3O95236 402 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 TGM1P22735 817 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 ACVR2AP27037 513 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 CD40LGP29965 261 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 NUMA1Q14980 2115 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 TCEA2Q15560 299 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 SLC5A12Q1EHB4 618 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 TNFAIP8L2Q6P589 184 aaPredicted RBP14.45□□□□□ -0.1
USP28-214ENST00000545540 GDPD4Q6W3E5 623 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 ARMCX6Q7L4S7 300 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 SYNPOQ8N3V7 929 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 CEP295NLQ96MC4 621 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 EXOSC4Q9NPD3 245 aaKnown RBP14.45□□□□□ -0.1
USP28-214ENST00000545540 ADPRHL2Q9NX46 363 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 WNT6Q9Y6F9 365 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 TRIOO75962 3097 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 ATG2BQ96BY7 2078 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 JUNDP17535 347 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 XPAP23025 273 aaPredicted RBP14.45□□□□□ -0.1
USP28-214ENST00000545540 CTSKP43235 329 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 SERPINB10P48595 397 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 TRPC1P48995 793 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 ALDH9A1P49189 494 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 TAS2R50P59544 299 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 C2orf80Q0P641 193 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 MTAPQ13126 283 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 STEAP3Q658P3 488 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 FBLIM1Q8WUP2 373 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 CCM2Q9BSQ5 444 aa14.45□□□□□ -0.1
USP28-214ENST00000545540 WDR12Q9GZL7 423 aaKnown RBP14.45□□□□□ -0.1
USP28-214ENST00000545540 SCHIP1Q9P0W5 487 aaPredicted RBP14.45□□□□□ -0.1
USP28-214ENST00000545540 SPTBN5Q9NRC6 3674 aaKnown RBP14.44□□□□□ -0.1
USP28-214ENST00000545540 WWP2O00308 870 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 CHI3L1P36222 383 aaPredicted RBP14.44□□□□□ -0.1
USP28-214ENST00000545540 RECQLP46063 649 aaPredicted RBP14.44□□□□□ -0.1
USP28-214ENST00000545540 KEAP1Q14145 624 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 DUSP7Q16829 419 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 PLEKHG7Q6ZR37 379 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 TRAPPC5Q8IUR0 188 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 CBARPQ8N350 705 aaPredicted RBP14.44□□□□□ -0.1
USP28-214ENST00000545540 SLC43A3Q8NBI5 491 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 ING5Q8WYH8 240 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 ITPAQ9BY32 194 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 IMPAD1Q9NX62 359 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 RUVBL1Q9Y265 456 aaKnown RBP14.44□□□□□ -0.1
USP28-214ENST00000545540 KPNA3O00505 521 aaPredicted RBP14.44□□□□□ -0.1
USP28-214ENST00000545540 LRRTM2O43300 516 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 POP4O95707 220 aaKnown RBP14.44□□□□□ -0.1
USP28-214ENST00000545540 CTSLP07711 333 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 ITGA1P56199 1179 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 LSM11P83369 360 aaKnown RBP eCLIP14.44□□□□□ -0.16e-18■■■■■ 77.1
USP28-214ENST00000545540 TLE2Q04725 743 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 CNTN1Q12860 1018 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 MPEG1Q2M385 716 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 PROX2Q3B8N5 592 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 ARMCX4Q5H9R4 360 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 ZC3H12BQ5HYM0 836 aaKnown RBP14.44□□□□□ -0.1
USP28-214ENST00000545540 PRSS48Q7RTY5 328 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 RBM45Q8IUH3 476 aaKnown RBP14.44□□□□□ -0.1
USP28-214ENST00000545540 VANGL1Q8TAA9 524 aaPredicted RBP14.44□□□□□ -0.1
USP28-214ENST00000545540 CLP1Q92989 425 aaKnown RBP14.44□□□□□ -0.1
USP28-214ENST00000545540 UCN3Q969E3 161 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 TRMT2BQ96GJ1 504 aaKnown RBP14.44□□□□□ -0.1
USP28-214ENST00000545540 WFDC6Q9BQY6 131 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 DOHHQ9BU89 302 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 SIAEQ9HAT2 523 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 ATAD3AQ9NVI7 634 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 ERVK13-1Q9NX77 482 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms