RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 TMEM184BQ9Y519 407 aaPredicted RBP16.29■□□□□ 0.2
LIG1-204ENST00000542460 WDFY3Q8IZQ1 3526 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 DSCR3O14972 297 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 CHEK2O96017 543 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 TGFB1P01137 390 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 SERPINB3P29508 390 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 RPS13P62277 151 aaKnown RBP16.29■□□□□ 0.2
LIG1-204ENST00000542460 TMEM35AQ53FP2 167 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 TOR1AIP1Q5JTV8 583 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 KHDRBS2Q5VWX1 349 aaKnown RBP16.29■□□□□ 0.2
LIG1-204ENST00000542460 KANK2Q63ZY3 851 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 ABHD13Q7L211 337 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 RNF175Q8N4F7 328 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 MS4A6EQ96DS6 147 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 C10orf90Q96M02 699 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 MAGEB18Q96M61 343 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 ZNF578Q96N58 590 aaPredicted RBP16.29■□□□□ 0.2
LIG1-204ENST00000542460 LRFN5Q96NI6 719 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 SORT1Q99523 831 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 KLHL31Q9H511 634 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 BRF2Q9HAW0 419 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 DHCR7Q9UBM7 475 aaKnown RBP16.29■□□□□ 0.2
LIG1-204ENST00000542460 HAO1Q9UJM8 370 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 ACSL6Q9UKU0 697 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 FRYQ5TBA9 3013 aa16.28■□□□□ 0.2
LIG1-204ENST00000542460 A0A1B0GX78 115 aa16.28■□□□□ 0.2
LIG1-204ENST00000542460 SERTM1A2A2V5 107 aa16.28■□□□□ 0.2
LIG1-204ENST00000542460 KLK3P07288 261 aaPredicted RBP16.28■□□□□ 0.2
LIG1-204ENST00000542460 HSD3B1P14060 373 aa16.28■□□□□ 0.2
LIG1-204ENST00000542460 ALOX12P18054 663 aa16.28■□□□□ 0.2
LIG1-204ENST00000542460 HSD3B2P26439 372 aa16.28■□□□□ 0.2
LIG1-204ENST00000542460 HNRNPH1P31943 449 aaKnown RBP16.28■□□□□ 0.2
LIG1-204ENST00000542460 RPL14P50914 215 aaKnown RBP16.28■□□□□ 0.2
LIG1-204ENST00000542460 TGM3Q08188 693 aa16.28■□□□□ 0.2
LIG1-204ENST00000542460 CUL3Q13618 768 aa16.28■□□□□ 0.2
LIG1-204ENST00000542460 ABRAXAS2Q15018 415 aa16.28■□□□□ 0.2
LIG1-204ENST00000542460 HERC3Q15034 1050 aa16.28■□□□□ 0.2
LIG1-204ENST00000542460 DEPDC1Q5TB30 811 aa16.28■□□□□ 0.2
LIG1-204ENST00000542460 ZNF781Q8N8C0 355 aa16.28■□□□□ 0.2
LIG1-204ENST00000542460 GBP7Q8N8V2 638 aaPredicted RBP16.28■□□□□ 0.2
LIG1-204ENST00000542460 SRFBP1Q8NEF9 429 aaKnown RBP16.28■□□□□ 0.2
LIG1-204ENST00000542460 OR2L5Q8NG80 312 aa16.28■□□□□ 0.2
LIG1-204ENST00000542460 ZCCHC10Q8TBK6 192 aa16.28■□□□□ 0.2
LIG1-204ENST00000542460 PROKR1Q8TCW9 393 aa16.28■□□□□ 0.2
LIG1-204ENST00000542460 AGR3Q8TD06 166 aa16.28■□□□□ 0.2
LIG1-204ENST00000542460 UTP15Q8TED0 518 aaKnown RBP16.28■□□□□ 0.2
LIG1-204ENST00000542460 GAL3ST3Q96A11 431 aa16.28■□□□□ 0.2
LIG1-204ENST00000542460 MVB12AQ96EY5 273 aa16.28■□□□□ 0.2
LIG1-204ENST00000542460 F2RL3Q96RI0 385 aa16.28■□□□□ 0.2
LIG1-204ENST00000542460 SERPINI1Q99574 410 aa16.28■□□□□ 0.2
LIG1-204ENST00000542460 CENPKQ9BS16 269 aa16.28■□□□□ 0.2
LIG1-204ENST00000542460 OR51B5Q9H339 312 aa16.28■□□□□ 0.2
LIG1-204ENST00000542460 NMRK1Q9NWW6 199 aa16.28■□□□□ 0.2
LIG1-204ENST00000542460 NDOR1Q9UHB4 597 aa16.28■□□□□ 0.2
LIG1-204ENST00000542460 CDC14AQ9UNH5 594 aa16.28■□□□□ 0.2
LIG1-204ENST00000542460 MRPS2Q9Y399 296 aaKnown RBP16.28■□□□□ 0.2
LIG1-204ENST00000542460 FIS1Q9Y3D6 152 aa16.28■□□□□ 0.2
LIG1-204ENST00000542460 DNAJC15Q9Y5T4 150 aa16.28■□□□□ 0.2
LIG1-204ENST00000542460 MAP1BP46821 2468 aaKnown RBP16.28■□□□□ 0.2
LIG1-204ENST00000542460 TMEM233B4DJY2 109 aa16.27■□□□□ 0.2
LIG1-204ENST00000542460 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.27■□□□□ 0.2
LIG1-204ENST00000542460 STMND1H3BQB6 276 aa16.27■□□□□ 0.2
LIG1-204ENST00000542460 MEN1O00255 615 aa16.27■□□□□ 0.2
LIG1-204ENST00000542460 ERI3O43414 337 aaKnown RBP16.27■□□□□ 0.2
LIG1-204ENST00000542460 MED26O95402 600 aa16.27■□□□□ 0.2
LIG1-204ENST00000542460 DLGAP3O95886 979 aa16.27■□□□□ 0.2
LIG1-204ENST00000542460 ZNF888P0CJ79 500 aaPredicted RBP16.27■□□□□ 0.2
LIG1-204ENST00000542460 SMIM10L1P0DMW3 83 aa16.27■□□□□ 0.2
LIG1-204ENST00000542460 RORAP35398 523 aa16.27■□□□□ 0.2
LIG1-204ENST00000542460 HTR6P50406 440 aa16.27■□□□□ 0.2
LIG1-204ENST00000542460 SKP1P63208 163 aa16.27■□□□□ 0.2
LIG1-204ENST00000542460 OCRLQ01968 901 aa16.27■□□□□ 0.2
LIG1-204ENST00000542460 ABHD18Q0P651 414 aa16.27■□□□□ 0.2
LIG1-204ENST00000542460 CSTF3Q12996 717 aaKnown RBP16.27■□□□□ 0.2
LIG1-204ENST00000542460 ST3GAL2Q16842 350 aa16.27■□□□□ 0.2
LIG1-204ENST00000542460 UGT3A2Q3SY77 523 aa16.27■□□□□ 0.2
LIG1-204ENST00000542460 FAM219BQ5XKK7 198 aa16.27■□□□□ 0.2
LIG1-204ENST00000542460 NIPAL1Q6NVV3 410 aa16.27■□□□□ 0.2
LIG1-204ENST00000542460 PRMT9Q6P2P2 845 aa16.27■□□□□ 0.2
LIG1-204ENST00000542460 TRIM40Q6P9F5 258 aa16.27■□□□□ 0.2
LIG1-204ENST00000542460 C6orf15Q6UXA7 325 aaPredicted RBP16.27■□□□□ 0.2
LIG1-204ENST00000542460 AFAP1L2Q8N4X5 818 aa16.27■□□□□ 0.2
LIG1-204ENST00000542460 GALNT6Q8NCL4 622 aa16.27■□□□□ 0.2
LIG1-204ENST00000542460 RNF31Q96EP0 1072 aa16.27■□□□□ 0.2
LIG1-204ENST00000542460 SMIM10Q96HG1 83 aa16.27■□□□□ 0.2
LIG1-204ENST00000542460 DPH2Q9BQC3 489 aaPredicted RBP16.27■□□□□ 0.2
LIG1-204ENST00000542460 AICDAQ9GZX7 198 aa16.27■□□□□ 0.2
LIG1-204ENST00000542460 ANKHQ9HCJ1 492 aa16.27■□□□□ 0.2
LIG1-204ENST00000542460 EPG5Q9HCE0 2579 aa16.27■□□□□ 0.19
LIG1-204ENST00000542460 CEP295Q9C0D2 2601 aa16.27■□□□□ 0.19
LIG1-204ENST00000542460 FOXS1O43638 330 aa16.26■□□□□ 0.19
LIG1-204ENST00000542460 SH3BGRLO75368 114 aa16.26■□□□□ 0.19
LIG1-204ENST00000542460 CCNYL3P0C7X3 344 aa16.26■□□□□ 0.19
LIG1-204ENST00000542460 AVPR1BP47901 424 aa16.26■□□□□ 0.19
LIG1-204ENST00000542460 ARFIP1P53367 373 aa16.26■□□□□ 0.19
LIG1-204ENST00000542460 PLA2G16P53816 162 aa16.26■□□□□ 0.19
LIG1-204ENST00000542460 RAB8AP61006 207 aa16.26■□□□□ 0.19
LIG1-204ENST00000542460 COL9A2Q14055 689 aaPredicted RBP16.26■□□□□ 0.19
LIG1-204ENST00000542460 MAP7Q14244 749 aa16.26■□□□□ 0.19
LIG1-204ENST00000542460 TBC1D25Q3MII6 688 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms