RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 PDLIM2Q96JY6 352 aa10.86□□□□□ -0.67
CLSTN3-209ENST00000539982 PTCHD1Q96NR3 888 aa10.86□□□□□ -0.67
CLSTN3-209ENST00000539982 GPATCH1Q9BRR8 931 aaKnown RBP10.86□□□□□ -0.67
CLSTN3-209ENST00000539982 TTYH2Q9BSA4 534 aa10.86□□□□□ -0.67
CLSTN3-209ENST00000539982 RAB6BQ9NRW1 208 aa10.86□□□□□ -0.67
CLSTN3-209ENST00000539982 PNPLA3Q9NST1 481 aa10.86□□□□□ -0.67
CLSTN3-209ENST00000539982 CRYL1Q9Y2S2 319 aa10.86□□□□□ -0.67
CLSTN3-209ENST00000539982 TCRBV7S2A1N4TA0A589 114 aa10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 ZNF860A6NHJ4 632 aa10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 SAGE2PA6NJ88 616 aa10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 E5RI56 91 aa10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 GFYI3L273 518 aa10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 CHST10O43529 356 aa10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 ZBTB14O43829 449 aa10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 LCMT2O60294 686 aaKnown RBP10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 VAPBO95292 243 aa10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 IFNB1P01574 187 aa10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 GLI4P10075 376 aa10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 ARNTP27540 789 aa10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 SKIV2L2P42285 1042 aaKnown RBP10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 KIR2DL3P43628 341 aa10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 NPY2RP49146 381 aa10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 SESN2P58004 480 aaPredicted RBP10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 GPR85P60893 370 aa10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 CRADDP78560 199 aa10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 TBX2Q13207 712 aaPredicted RBP10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 HERC3Q15034 1050 aa10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 RPS6KA1Q15418 735 aa10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 CAPN13Q6MZZ7 669 aaPredicted RBP10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 KIAA0408Q6ZU52 694 aa10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 Q71RC1 249 aaPredicted RBP10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 LIX1LQ8IVB5 337 aa10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 CYP4Z2PQ8N1L4 340 aa10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 AFAP1L2Q8N4X5 818 aa10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 TMEM156Q8N614 296 aa10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 LRRC57Q8N9N7 239 aa10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 GOT1L1Q8NHS2 421 aaPredicted RBP10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 SMR3AQ99954 134 aa10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 IL22Q9GZX6 179 aa10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 PCBD2Q9H0N5 130 aa10.85□□□□□ -0.67
CLSTN3-209ENST00000539982 NSD1Q96L73 2696 aaPredicted RBP10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 ZNF407Q9C0G0 2248 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 A0A0G2JNJ9 132 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 OR14I1A6ND48 311 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 BCKDKO14874 412 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 GALR3O60755 368 aaPredicted RBP10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 B4GALT2O60909 372 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 DNAJB6O75190 326 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 TUBB4AP04350 444 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 SLC35G6P0C7Q6 338 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 MPC1LP0DKB6 136 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 IMPA1P29218 277 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 GRK3P35626 688 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 COILP38432 576 aaPredicted RBP10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 PEX19P40855 299 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 CLCN2P51788 898 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 CLCN7P51798 805 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 PPIAP62937 165 aaKnown RBP10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 BTG2P78543 158 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 OASLQ15646 514 aaKnown RBP10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 SLC25A35Q3KQZ1 300 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 TTLL9Q3SXZ7 439 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 NIPAL1Q6NVV3 410 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 ZNF585AQ6P3V2 769 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 B3GNT6Q6ZMB0 384 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 CYHR1Q6ZMK1 362 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 QSOX2Q6ZRP7 698 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 RGS9BPQ6ZS82 235 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 TAOK1Q7L7X3 1001 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 CDC20BQ86Y33 519 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 UBL4BQ8N7F7 174 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 PRELID2Q8N945 189 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 MFSD9Q8NBP5 474 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 ACRBPQ8NEB7 543 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 OR5M9Q8NGP3 310 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 CREB3L4Q8TEY5 395 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 ATG4AQ8WYN0 398 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 C18orf12Q96KH6 178 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 KIFC1Q9BW19 673 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 ZDHHC11Q9H8X9 412 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 TIMMDC1Q9NPL8 285 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 CCDC177Q9NQR7 707 aaPredicted RBP10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 BFARQ9NZS9 450 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 KLHL42Q9P2K6 505 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 Q9UFV3 132 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 AMFRQ9UKV5 643 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 DRG1Q9Y295 367 aaKnown RBP10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 FAM215AQ9Y5M1 114 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 DNAJC13O75165 2243 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 VPS13CQ709C8 3753 aa10.84□□□□□ -0.67
CLSTN3-209ENST00000539982 HRNRQ86YZ3 2850 aaPredicted RBP10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 TCRBV16S1A1N1A0A5B0 115 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 FIGNL2A6NMB9 653 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 BTNL10A8MVZ5 291 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 GOLGA8KD6RF30 607 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 GOLGA8TH3BQL2 631 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 AP3B1O00203 1094 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 LIASO43766 372 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 ITGA10O75578 1167 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 ETS1P14921 441 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms