RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 ONECUT2O95948 504 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 HNF4AP41235 474 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 CCNG1P51959 295 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 LCP2Q13094 533 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 CPSF6Q16630 551 aaKnown RBP eCLIP12.35□□□□□ -0.43
CCDC42-202ENST00000539522 TCTE1Q5JU00 501 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 C1orf189Q5VU69 101 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 FAM69BQ5VUD6 431 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 TLDC1Q6P9B6 456 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 FAM198BQ6UWH4 519 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 SPATA21Q7Z572 469 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 TMEM126BQ8IUX1 230 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 KIRREL3Q8IZU9 778 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 METTL27Q8N6F8 245 aaPredicted RBP12.35□□□□□ -0.43
CCDC42-202ENST00000539522 ANKS4BQ8N8V4 417 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 CCDC197Q8NCU1 140 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 HUS1BQ8NHY5 278 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 SNIP1Q8TAD8 396 aaKnown RBP12.35□□□□□ -0.43
CCDC42-202ENST00000539522 UTP15Q8TED0 518 aaKnown RBP12.35□□□□□ -0.43
CCDC42-202ENST00000539522 SLC13A3Q8WWT9 602 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 SEC16BQ96JE7 1060 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 LRFN5Q96NI6 719 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 SORT1Q99523 831 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 ZPBPQ9BS86 351 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 MS4A8Q9BY19 250 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 ZNF717Q9BY31 904 aaPredicted RBP12.35□□□□□ -0.43
CCDC42-202ENST00000539522 CUTCQ9NTM9 273 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 KLHL14Q9P2G3 628 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 TRPS1Q9UHF7 1281 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 RAP2CQ9Y3L5 183 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 ANGPTL3Q9Y5C1 460 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 NUP210LQ5VU65 1888 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 APC2O95996 2303 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 MAGEB17A8MXT2 336 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 TMEM233B4DJY2 109 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 MEN1O00255 615 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 DSCR3O14972 297 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 RAD1O60671 282 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 CPNE3O75131 537 aaKnown RBP12.34□□□□□ -0.43
CCDC42-202ENST00000539522 CLEC3AO75596 197 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 ESRRBO95718 433 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 OR1D4P47884 311 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 HK2P52789 917 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 EMP3P54852 163 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 PWP1Q13610 501 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 GRM7Q14831 915 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 RBBP7Q16576 425 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 UGT3A2Q3SY77 523 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 ARL13AQ5H913 290 aaPredicted RBP12.34□□□□□ -0.43
CCDC42-202ENST00000539522 MED27Q6P2C8 311 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 GPRIN3Q6ZVF9 776 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 TTLL10Q6ZVT0 673 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 MILR1Q7Z6M3 343 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 WDR75Q8IWA0 830 aaKnown RBP12.34□□□□□ -0.43
CCDC42-202ENST00000539522 CACNA2D3Q8IZS8 1091 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 CDYL2Q8N8U2 506 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 ZCCHC10Q8TBK6 192 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 PIWIL2Q8TC59 973 aaKnown RBP12.34□□□□□ -0.43
CCDC42-202ENST00000539522 MS4A6EQ96DS6 147 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 QRFPRQ96P65 431 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 F2RL3Q96RI0 385 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 HBEGFQ99075 208 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 MTERF1Q99551 399 aaKnown RBP12.34□□□□□ -0.43
CCDC42-202ENST00000539522 SIKE1Q9BRV8 207 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 PITHD1Q9GZP4 211 aaPredicted RBP12.34□□□□□ -0.43
CCDC42-202ENST00000539522 TUBB1Q9H4B7 451 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 CCDC86Q9H6F5 360 aaKnown RBP12.34□□□□□ -0.43
CCDC42-202ENST00000539522 FANCEQ9HB96 536 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 MID1IP1Q9NPA3 183 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 DMRT3Q9NQL9 472 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 THSD1Q9NS62 852 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 ARL2BPQ9Y2Y0 163 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 CCL27Q9Y4X3 112 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 TIMM22Q9Y584 194 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 PTGDR2Q9Y5Y4 395 aa12.34□□□□□ -0.43
CCDC42-202ENST00000539522 ITPR1Q14643 2758 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 A0A0A6YYC8 382 aaPredicted RBP12.33□□□□□ -0.44
CCDC42-202ENST00000539522 SLCO1B7G3V0H7 640 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 I3L1I5 382 aaPredicted RBP12.33□□□□□ -0.44
CCDC42-202ENST00000539522 SH3BGRLO75368 114 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 OTCP00480 354 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 TGFB1P01137 390 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 PDYNP01213 254 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 SERPINA6P08185 405 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 ZNF888P0CJ79 500 aaPredicted RBP12.33□□□□□ -0.44
CCDC42-202ENST00000539522 LIPCP11150 499 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 IL1RNP18510 177 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 SERPINB3P29508 390 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 GRK3P35626 688 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 STAT5AP42229 794 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 RPL14P50914 215 aaKnown RBP12.33□□□□□ -0.44
CCDC42-202ENST00000539522 RPS13P62277 151 aaKnown RBP12.33□□□□□ -0.44
CCDC42-202ENST00000539522 LAPTM5Q13571 262 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 MAP7Q14244 749 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 SYT16Q17RD7 645 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 TOR1AIP1Q5JTV8 583 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 CLEC6AQ6EIG7 209 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 CGB2Q6NT52 195 aa12.33□□□□□ -0.44
CCDC42-202ENST00000539522 C6orf15Q6UXA7 325 aaPredicted RBP12.33□□□□□ -0.44
CCDC42-202ENST00000539522 ZNF793Q6ZN11 406 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms