RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 PSMF1Q92530 271 aa10.91□□□□□ -0.66
RTN3-209ENST00000538995 TBC1D20Q96BZ9 403 aa10.91□□□□□ -0.66
RTN3-209ENST00000538995 SNRNP40Q96DI7 357 aaKnown RBP10.91□□□□□ -0.66
RTN3-209ENST00000538995 MOCOSQ96EN8 888 aa10.91□□□□□ -0.66
RTN3-209ENST00000538995 IMMP1LQ96LU5 166 aa10.91□□□□□ -0.66
RTN3-209ENST00000538995 BARD1Q99728 777 aaKnown RBP10.91□□□□□ -0.66
RTN3-209ENST00000538995 TMEM79Q9BSE2 394 aa10.91□□□□□ -0.66
RTN3-209ENST00000538995 LRRC1Q9BTT6 524 aa10.91□□□□□ -0.66
RTN3-209ENST00000538995 RNF32Q9H0A6 362 aa10.91□□□□□ -0.66
RTN3-209ENST00000538995 NT5DC2Q9H857 520 aa10.91□□□□□ -0.66
RTN3-209ENST00000538995 DNAJC11Q9NVH1 559 aa10.91□□□□□ -0.66
RTN3-209ENST00000538995 MTRF1LQ9UGC7 380 aaKnown RBP10.91□□□□□ -0.66
RTN3-209ENST00000538995 RNF112Q9ULX5 631 aa10.91□□□□□ -0.66
RTN3-209ENST00000538995 DYTNA2CJ06 578 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 ZNF860A6NHJ4 632 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 NCF1BA6NI72 391 aaPredicted RBP10.9□□□□□ -0.66
RTN3-209ENST00000538995 NCF1CA8MVU1 366 aaPredicted RBP10.9□□□□□ -0.66
RTN3-209ENST00000538995 MAGEB17A8MXT2 336 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 TAPBPO15533 448 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 KERAO60938 352 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 STK16O75716 305 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 WFS1O76024 890 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 S100BP04271 92 aaPredicted RBP10.9□□□□□ -0.66
RTN3-209ENST00000538995 SLC35E2BP0CK96 405 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 SMIM10L1P0DMW3 83 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 NCF1P14598 390 aaPredicted RBP10.9□□□□□ -0.66
RTN3-209ENST00000538995 GDF5P43026 501 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 RHAGQ02094 409 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 HYAL2Q12891 473 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 SLBPQ14493 270 aaKnown RBP eCLIP10.9□□□□□ -0.66
RTN3-209ENST00000538995 RBBP5Q15291 538 aaKnown RBP10.9□□□□□ -0.66
RTN3-209ENST00000538995 OR4D1Q15615 310 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 INAQ16352 499 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 EXT1Q16394 746 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 PDK4Q16654 411 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 GLE1Q53GS7 698 aaKnown RBP10.9□□□□□ -0.66
RTN3-209ENST00000538995 TMIGD1Q6UXZ0 262 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 RAPH1Q70E73 1250 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 LRRC70Q7Z2Q7 622 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 ANKRD37Q7Z713 158 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.9□□□□□ -0.66
RTN3-209ENST00000538995 SPATA6LQ8N4H0 392 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 DNAJB14Q8TBM8 379 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 BRIX1Q8TDN6 353 aaKnown RBP10.9□□□□□ -0.66
RTN3-209ENST00000538995 CREB3L4Q8TEY5 395 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 GAL3ST3Q96A11 431 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 WDR34Q96EX3 536 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 PEX11GQ96HA9 241 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 SMIM10Q96HG1 83 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 EFCAB11Q9BUY7 163 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 FUT8Q9BYC5 575 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 UNKQ9C0B0 810 aaKnown RBP10.9□□□□□ -0.66
RTN3-209ENST00000538995 ACSS3Q9H6R3 686 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 NMRAL1Q9HBL8 299 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 AGPAT4Q9NRZ5 378 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 LANCL2Q9NS86 450 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 NUDT4Q9NZJ9 180 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 CD274Q9NZQ7 290 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 TEKT2Q9UIF3 430 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 PTBP2Q9UKA9 531 aaKnown RBP10.9□□□□□ -0.66
RTN3-209ENST00000538995 COPG1Q9Y678 874 aaKnown RBP10.9□□□□□ -0.66
RTN3-209ENST00000538995 MAST4O15021 2626 aa10.9□□□□□ -0.66
RTN3-209ENST00000538995 USP9YO00507 2555 aaPredicted RBP10.9□□□□□ -0.66
RTN3-209ENST00000538995 COL12A1Q99715 3063 aa10.9□□□□□ -0.67
RTN3-209ENST00000538995 SPTAN1Q13813 2472 aaKnown RBP10.9□□□□□ -0.67
RTN3-209ENST00000538995 CNTRLQ7Z7A1 2325 aa10.89□□□□□ -0.67
RTN3-209ENST00000538995 A0A087X1B8 175 aa10.89□□□□□ -0.67
RTN3-209ENST00000538995 A0A088AWK7 358 aa10.89□□□□□ -0.67
RTN3-209ENST00000538995 CTAGE15A4D2H0 777 aa10.89□□□□□ -0.67
RTN3-209ENST00000538995 TCP11X1B4DZS4 312 aa10.89□□□□□ -0.67
RTN3-209ENST00000538995 CLGNO14967 610 aa10.89□□□□□ -0.67
RTN3-209ENST00000538995 CHST10O43529 356 aa10.89□□□□□ -0.67
RTN3-209ENST00000538995 CLEC3AO75596 197 aa10.89□□□□□ -0.67
RTN3-209ENST00000538995 FAM155BO75949 473 aa10.89□□□□□ -0.67
RTN3-209ENST00000538995 UQCRHP07919 91 aa10.89□□□□□ -0.67
RTN3-209ENST00000538995 LTA4HP09960 611 aaKnown RBP10.89□□□□□ -0.67
RTN3-209ENST00000538995 CTAGE8P0CG41 777 aa10.89□□□□□ -0.67
RTN3-209ENST00000538995 ITGAMP11215 1152 aa10.89□□□□□ -0.67
RTN3-209ENST00000538995 RNH1P13489 461 aaKnown RBP10.89□□□□□ -0.67
RTN3-209ENST00000538995 TFEBP19484 476 aa10.89□□□□□ -0.67
RTN3-209ENST00000538995 ZNF10P21506 573 aaPredicted RBP10.89□□□□□ -0.67
RTN3-209ENST00000538995 GNLYP22749 145 aa10.89□□□□□ -0.67
RTN3-209ENST00000538995 UQCRFS1P47985 274 aa10.89□□□□□ -0.67
RTN3-209ENST00000538995 ARG2P78540 354 aa10.89□□□□□ -0.67
RTN3-209ENST00000538995 E2F2Q14209 437 aa10.89□□□□□ -0.67
RTN3-209ENST00000538995 ABRAXAS2Q15018 415 aa10.89□□□□□ -0.67
RTN3-209ENST00000538995 EFTUD2Q15029 972 aaKnown RBP eCLIP10.89□□□□□ -0.673e-9■■■■□ 23.3
RTN3-209ENST00000538995 NSDHLQ15738 373 aa10.89□□□□□ -0.67
RTN3-209ENST00000538995 C18orf21Q32NC0 220 aaPredicted RBP10.89□□□□□ -0.67
RTN3-209ENST00000538995 PAGE2BQ5JRK9 111 aa10.89□□□□□ -0.67
RTN3-209ENST00000538995 RPUSD3Q6P087 351 aaKnown RBP10.89□□□□□ -0.67
RTN3-209ENST00000538995 QSOX2Q6ZRP7 698 aa10.89□□□□□ -0.67
RTN3-209ENST00000538995 LINC00696Q6ZRV3 163 aa10.89□□□□□ -0.67
RTN3-209ENST00000538995 LANCL3Q6ZV70 420 aa10.89□□□□□ -0.67
RTN3-209ENST00000538995 CMC1Q7Z7K0 106 aa10.89□□□□□ -0.67
RTN3-209ENST00000538995 ISCA2Q86U28 154 aa10.89□□□□□ -0.67
RTN3-209ENST00000538995 CTAGE6Q86UF2 777 aa10.89□□□□□ -0.67
RTN3-209ENST00000538995 CTAGE4Q8IX94 777 aa10.89□□□□□ -0.67
RTN3-209ENST00000538995 CISD2Q8N5K1 135 aaKnown RBP10.89□□□□□ -0.67
RTN3-209ENST00000538995 OR5T3Q8NGG3 340 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms