RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 BDKRB1P46663 353 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 SPINT3P49223 89 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 CCL23P55773 120 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 SNRPD1P62314 119 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 NKX3-2P78367 333 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 TSTQ16762 297 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 LRIT3Q3SXY7 679 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 KIAA1958Q8N8K9 716 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 B3GNT7Q8NFL0 401 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 OR7G3Q8NG95 312 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 HUS1BQ8NHY5 278 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 WDR20Q8TBZ3 569 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 WDR70Q9NW82 654 aa8.9□□□□□ -0.98
LIMCH1-215ENST00000512632 KIAA0513O60268 411 aa8.9□□□□□ -0.99
LIMCH1-215ENST00000512632 C6orf47O95873 294 aa8.9□□□□□ -0.99
LIMCH1-215ENST00000512632 SLC16A8O95907 504 aa8.9□□□□□ -0.99
LIMCH1-215ENST00000512632 TCEA1P23193 301 aaKnown RBP8.9□□□□□ -0.99
LIMCH1-215ENST00000512632 MAPK8P45983 427 aa8.9□□□□□ -0.99
LIMCH1-215ENST00000512632 CSNK2BP67870 215 aa8.9□□□□□ -0.99
LIMCH1-215ENST00000512632 RAE1P78406 368 aaKnown RBP8.9□□□□□ -0.99
LIMCH1-215ENST00000512632 MADCAM1Q13477 382 aa8.9□□□□□ -0.99
LIMCH1-215ENST00000512632 EEF1AKMT2Q5JPI9 291 aaKnown RBP8.9□□□□□ -0.99
LIMCH1-215ENST00000512632 CDKL4Q5MAI5 379 aa8.9□□□□□ -0.99
LIMCH1-215ENST00000512632 MSANTD1Q6ZTZ1 278 aa8.9□□□□□ -0.99
LIMCH1-215ENST00000512632 Q6ZVU0 165 aa8.9□□□□□ -0.99
LIMCH1-215ENST00000512632 LACC1Q8IV20 430 aa8.9□□□□□ -0.99
LIMCH1-215ENST00000512632 CLP1Q92989 425 aaKnown RBP8.9□□□□□ -0.99
LIMCH1-215ENST00000512632 COL21A1Q96P44 957 aa8.9□□□□□ -0.99
LIMCH1-215ENST00000512632 GABARAPL3Q9BY60 117 aa8.9□□□□□ -0.99
LIMCH1-215ENST00000512632 SP140LQ9H930 580 aa8.9□□□□□ -0.99
LIMCH1-215ENST00000512632 ZNF556Q9HAH1 456 aa8.9□□□□□ -0.99
LIMCH1-215ENST00000512632 PCDHGA2Q9Y5H1 932 aa8.9□□□□□ -0.99
LIMCH1-215ENST00000512632 ISPDA4D126 451 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 ADAMDEC1O15204 470 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 PRMT3O60678 531 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 AOC2O75106 756 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 TGFB1P01137 390 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 ADRA2AP08913 450 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 UGT2B10P36537 528 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 CSTF3Q12996 717 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 IFI44LQ53G44 452 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 RSBN1Q5VWQ0 802 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 TMCO2Q7Z6W1 182 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 DEFB128Q7Z7B8 93 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 OR8H2Q8N162 312 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 KBTBD8Q8NFY9 601 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 CIDECQ96AQ7 238 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 RERGLQ9H628 205 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 ELAC1Q9H777 363 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 EHD3Q9NZN3 535 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 PCDHGB6Q9Y5F9 930 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 C1orf226A1L170 272 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 SAGE2PA6NJ88 616 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 H3BM21 787 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 TAF4O00268 1085 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 GABRR2P28476 465 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 AP1S2P56377 157 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 MEF2AQ02078 507 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 CDC20Q12834 499 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 ZNF181Q2M3W8 571 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 SPANXN2Q5MJ10 180 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 DEPDC1Q5TB30 811 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 LIPJQ5W064 366 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 NEK10Q6ZWH5 1172 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 TMPRSS11BQ86T26 416 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 RAVER1Q8IY67 606 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 CEP19Q96LK0 163 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 MGLLQ99685 303 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 TPK1Q9H3S4 243 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 SPATA6Q9NWH7 488 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 STOML2Q9UJZ1 356 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 EXO1Q9UQ84 846 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 PRAMEF33A0A0G2JMD5 474 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 A0A1W2PQ45 241 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 A0A1W2PQY0 241 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 CA12O43570 354 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 MRPS14O60783 128 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 PRAMEF10O60809 474 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 CHRM5P08912 532 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 CKMT1AP12532 417 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 ANXA8P13928 327 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 SOAT1P35610 550 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 FEN1P39748 380 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 COPZ1P61923 177 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 LRRC74AQ0VAA2 488 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 DOC2BQ14184 412 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 UAP1L1Q3KQV9 507 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 GPR155Q7Z3F1 870 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 ASZ1Q8WWH4 475 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 SLC35A5Q9BS91 424 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 CEP44Q9C0F1 390 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 OR51B5Q9H339 312 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 LSM7Q9UK45 103 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 ZW10O43264 779 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 CCNKO75909 580 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 AZGP1P25311 298 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 CTSCP53634 463 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 UGT2B15P54855 530 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 LEXMQ3ZCV2 418 aa8.89□□□□□ -0.99
LIMCH1-215ENST00000512632 C1QTNF12Q5T7M4 302 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms