RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 FADDQ13158 208 aa8.03□□□□□ -1.12
USP54-215ENST00000497106 NR0B2Q15466 257 aa8.03□□□□□ -1.12
USP54-215ENST00000497106 ZCCHC8Q6NZY4 707 aaKnown RBP8.03□□□□□ -1.12
USP54-215ENST00000497106 DUS1LQ6P1R4 473 aaKnown RBP8.03□□□□□ -1.12
USP54-215ENST00000497106 LRRC74BQ6ZQY2 392 aa8.03□□□□□ -1.12
USP54-215ENST00000497106 COMMD6Q7Z4G1 85 aa8.03□□□□□ -1.12
USP54-215ENST00000497106 DRAXINQ8NBI3 349 aaPredicted RBP8.03□□□□□ -1.12
USP54-215ENST00000497106 OR56A1Q8NGH5 318 aa8.03□□□□□ -1.12
USP54-215ENST00000497106 PIGKQ92643 395 aa8.03□□□□□ -1.12
USP54-215ENST00000497106 SCARF2Q96GP6 870 aaPredicted RBP8.03□□□□□ -1.12
USP54-215ENST00000497106 RHBGQ9H310 441 aa8.03□□□□□ -1.12
USP54-215ENST00000497106 DENND2DQ9H6A0 471 aaPredicted RBP8.03□□□□□ -1.12
USP54-215ENST00000497106 CLK4Q9HAZ1 481 aaKnown RBP8.03□□□□□ -1.12
USP54-215ENST00000497106 PDE7BQ9NP56 450 aa8.03□□□□□ -1.12
USP54-215ENST00000497106 KRCC1Q9NPI7 259 aaPredicted RBP8.03□□□□□ -1.12
USP54-215ENST00000497106 TRPC4Q9UBN4 977 aa8.03□□□□□ -1.12
USP54-215ENST00000497106 CA5BQ9Y2D0 317 aa8.03□□□□□ -1.12
USP54-215ENST00000497106 A0A0J9YVX5 310 aa8.02□□□□□ -1.12
USP54-215ENST00000497106 FAM220BPB1ANY3 271 aa8.02□□□□□ -1.12
USP54-215ENST00000497106 TPD52L2O43399 206 aaKnown RBP8.02□□□□□ -1.12
USP54-215ENST00000497106 SERPINB7O75635 380 aa8.02□□□□□ -1.12
USP54-215ENST00000497106 BCAS2O75934 225 aaPredicted RBP8.02□□□□□ -1.12
USP54-215ENST00000497106 PRR35P0CG20 571 aa8.02□□□□□ -1.12
USP54-215ENST00000497106 NR2F6P10588 404 aa8.02□□□□□ -1.12
USP54-215ENST00000497106 HSD17B1P14061 328 aa8.02□□□□□ -1.12
USP54-215ENST00000497106 ANPEPP15144 967 aa8.02□□□□□ -1.12
USP54-215ENST00000497106 NME1P15531 152 aaKnown RBP8.02□□□□□ -1.12
USP54-215ENST00000497106 EPORP19235 508 aa8.02□□□□□ -1.12
USP54-215ENST00000497106 HTR1EP28566 365 aa8.02□□□□□ -1.12
USP54-215ENST00000497106 CCT8P50990 548 aa8.02□□□□□ -1.12
USP54-215ENST00000497106 HNRNPFP52597 415 aaKnown RBP8.02□□□□□ -1.12
USP54-215ENST00000497106 EPHA4P54764 986 aa8.02□□□□□ -1.12
USP54-215ENST00000497106 KLC1Q07866 573 aa8.02□□□□□ -1.12
USP54-215ENST00000497106 RBBP4Q09028 425 aa8.02□□□□□ -1.12
USP54-215ENST00000497106 BIKQ13323 160 aa8.02□□□□□ -1.12
USP54-215ENST00000497106 KRT80Q6KB66 452 aa8.02□□□□□ -1.12
USP54-215ENST00000497106 ZNF547Q8IVP9 402 aa8.02□□□□□ -1.12
USP54-215ENST00000497106 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.02□□□□□ -1.12
USP54-215ENST00000497106 TAGAPQ8N103 731 aa8.02□□□□□ -1.12
USP54-215ENST00000497106 LILRA3Q8N6C8 439 aaPredicted RBP8.02□□□□□ -1.12
USP54-215ENST00000497106 LMNTD1Q8N9Z9 388 aa8.02□□□□□ -1.12
USP54-215ENST00000497106 OR2L3Q8NG85 312 aa8.02□□□□□ -1.12
USP54-215ENST00000497106 OR9I1Q8NGQ6 314 aa8.02□□□□□ -1.12
USP54-215ENST00000497106 EDAQ92838 391 aa8.02□□□□□ -1.12
USP54-215ENST00000497106 NDOR1Q9UHB4 597 aa8.02□□□□□ -1.12
USP54-215ENST00000497106 PTGDR2Q9Y5Y4 395 aa8.02□□□□□ -1.12
USP54-215ENST00000497106 CSNK1G3Q9Y6M4 447 aa8.02□□□□□ -1.12
USP54-215ENST00000497106 LILRA5A6NI73 299 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 OR10H2O60403 315 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 SLC6A2P23975 617 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 GRIA3P42263 894 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 C1orf61Q13536 156 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 OR4F3Q6IEY1 312 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 Q6ZSR9 355 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 PATL1Q86TB9 770 aaKnown RBP8.02□□□□□ -1.13
USP54-215ENST00000497106 MICU2Q8IYU8 434 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 C16orf78Q8WTQ4 265 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 APIPQ96GX9 242 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 BMFQ96LC9 184 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 ABCG4Q9H172 646 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 TM9SF3Q9HD45 589 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 SLC23A2Q9UGH3 650 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 DLGAP4Q9Y2H0 992 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 DUXAA6NLW8 204 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 RNASET2O00584 256 aaKnown RBP8.02□□□□□ -1.13
USP54-215ENST00000497106 ERAL1O75616 437 aaKnown RBP8.02□□□□□ -1.13
USP54-215ENST00000497106 SDC1P18827 310 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 UQCRC2P22695 453 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 SMIM11AP58511 58 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 ZXDAP98168 799 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 GLYATQ6IB77 296 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 OR52E8Q6IFG1 317 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 EXOSC8Q96B26 276 aaKnown RBP8.02□□□□□ -1.13
USP54-215ENST00000497106 GIMAP2Q9UG22 337 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 SRPX2O60687 465 aaPredicted RBP8.02□□□□□ -1.13
USP54-215ENST00000497106 UBXN7O94888 489 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 ZNF682O95780 498 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 ALDOCP09972 364 aaKnown RBP8.02□□□□□ -1.13
USP54-215ENST00000497106 HOXD12P35452 270 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 BTN3A2P78410 334 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 MRPS22P82650 360 aaKnown RBP8.02□□□□□ -1.13
USP54-215ENST00000497106 FGL2Q14314 439 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 LRRC23Q53EV4 343 aaPredicted RBP8.02□□□□□ -1.13
USP54-215ENST00000497106 SPESP1Q6UW49 350 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 WDR5BQ86VZ2 330 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 CARFQ8N187 725 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 ZNF555Q8NEP9 628 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 ADCY4Q8NFM4 1077 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 WDR20Q8TBZ3 569 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 MS4A8Q9BY19 250 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 TUBB1Q9H4B7 451 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 ZNF556Q9HAH1 456 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 TM7SF3Q9NS93 570 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 TBC1D29Q9UFV1 150 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 PLCL2Q9UPR0 1127 aa8.02□□□□□ -1.13
USP54-215ENST00000497106 OBSL1O75147 1896 aa8.01□□□□□ -1.13
USP54-215ENST00000497106 VILLO15195 856 aa8.01□□□□□ -1.13
USP54-215ENST00000497106 SLITRK5O94991 958 aa8.01□□□□□ -1.13
USP54-215ENST00000497106 ARRB2P32121 409 aa8.01□□□□□ -1.13
USP54-215ENST00000497106 VAC14Q08AM6 782 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms