RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 OR51E2Q9H255 320 aa15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 GPR83Q9NYM4 423 aa15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 GULP1Q9UBP9 304 aa15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 WNT9AO14904 365 aa15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 KCNK5O95279 499 aa15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 POU1F1P28069 291 aa15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 MAPK1P28482 360 aa15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 HOXA9P31269 272 aa15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 ARHGDIAP52565 204 aa15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 SLC35A2P78381 396 aa15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 ZNF77Q15935 545 aa15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 KLHL17Q6TDP4 642 aa15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 GLYATL1Q969I3 302 aa15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 THUMPD1Q9NXG2 353 aaKnown RBP15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 SH3BP4Q9P0V3 963 aa15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 SCHIP1Q9P0W5 487 aaPredicted RBP15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 TCF20Q9UGU0 1960 aaKnown RBP15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 MYO10Q9HD67 2058 aa15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 GNG14A0A1W2PPG7 69 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 CEBPBP17676 345 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 TCEA1P23193 301 aaKnown RBP15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 CD40LGP29965 261 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 RPS13P62277 151 aaKnown RBP15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 RAE1P78406 368 aaKnown RBP15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 LIPIQ6XZB0 460 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 PTOV1Q86YD1 416 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 P3H2Q8IVL5 708 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 CFAP206Q8IYR0 622 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 VN1R2Q8NFZ6 395 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 OR4K1Q8NGD4 311 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 HUS1BQ8NHY5 278 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 POF1BQ8WVV4 589 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 KCNS3Q9BQ31 491 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 TRIT1Q9H3H1 467 aaKnown RBP15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 DSN1Q9H410 356 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 KLHL42Q9P2K6 505 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 GABRR3A8MPY1 467 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 FAM227AF5H4B4 570 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 RFXAPO00287 272 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 GABARAPO95166 117 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 EPN2O95208 641 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 HPRP00739 348 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 ANXA4P09525 319 aaPredicted RBP15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 ZNF30P17039 623 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 PRPS1L1P21108 318 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 RRM2P31350 389 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 CTNNB1P35222 781 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 NNMTP40261 264 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 SP140Q13342 867 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 GAB1Q13480 694 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 CDKL4Q5MAI5 379 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 HIPK1Q86Z02 1210 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 TRAPPC5Q8IUR0 188 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 ZZZ3Q8IYH5 903 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 TRAM1L1Q8N609 369 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 OR6Q1Q8NGQ2 317 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 NXPE3Q969Y0 559 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 ACSL6Q9UKU0 697 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 TPRKBQ9Y3C4 175 aa15.89■□□□□ 0.13
CCDC88B-210ENST00000494566 WASH3PC4AMC7 463 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 J3KTA2 159 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 COQ9O75208 318 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 PSIP1O75475 530 aaKnown RBP15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 FABP3P05413 133 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 STSP08842 583 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 PTPN2P17706 415 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 SERPINB1P30740 379 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 VIPR2P41587 438 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 MC1RQ01726 317 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 GANABQ14697 944 aaKnown RBP15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 ZDHHC20Q5W0Z9 365 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 ZNF852Q6ZMS4 543 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 PLEKHG7Q6ZR37 379 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 OR7G3Q8NG95 312 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 OR5AK3PQ8NH89 298 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 DYNC2LI1Q8TCX1 351 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 CSGALNACT1Q8TDX6 532 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 CLP1Q92989 425 aaKnown RBP15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 SLC35B4Q969S0 331 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 OR2AG1Q9H205 316 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 QPCTLQ9NXS2 382 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 PLAGL1Q9UM63 463 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 GPC6Q9Y625 555 aaPredicted RBP15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 PNMA8CA0A1B0GUJ8 204 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 EIF3FO00303 357 aaPredicted RBP15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 AIREO43918 545 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 ATG13O75143 517 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 TGM1P22735 817 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 SLC19A1P41440 591 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 SELENBP1Q13228 472 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 MAD2L1BPQ15013 274 aaPredicted RBP15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 HIST2H2ACQ16777 129 aaPredicted RBP15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 VMACQ2NL98 169 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 ZNF805Q5CZA5 627 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 DDX59Q5T1V6 619 aaKnown RBP eCLIP15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 C11orf74Q86VG3 221 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 SLC44A2Q8IWA5 706 aaPredicted RBP15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 GTPBP3Q969Y2 492 aaKnown RBP15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 COPS4Q9BT78 406 aa15.88■□□□□ 0.13
CCDC88B-210ENST00000494566 ZSCAN5AQ9BUG6 496 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms