RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 PPP2R2BQ00005 443 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ZNF45Q02386 682 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 NCF4Q15080 339 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TYW3Q6IPR3 259 aaKnown RBP10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PHYKPLQ8IUZ5 450 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 FAM109AQ8N4B1 249 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 NATD1Q8N6N6 113 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ZUFSPQ96AP4 578 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PPP1R16AQ96I34 528 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 REXO5Q96IC2 774 aaKnown RBP10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TOX2Q96NM4 488 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 HTATIP2Q9BUP3 242 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SLC22A4Q9H015 551 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SLA2Q9H6Q3 261 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 EQTNQ9NQ60 294 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 B8ZZF3 427 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 RTCAO00442 366 aaKnown RBP10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CTSKP43235 329 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CTSL3PQ5NE16 218 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 C6orf136Q5SQH8 315 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TXNDC11Q6PKC3 985 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ADGRD2Q7Z7M1 963 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 GALNT7Q86SF2 657 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 NDNFQ8TB73 568 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 LRRC58Q96CX6 371 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 EGLN2Q96KS0 407 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 C1QTNF1Q9BXJ1 281 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ZCCHC2Q9C0B9 1178 aaKnown RBP10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 DERL2Q9GZP9 239 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 GPN2Q9H9Y4 310 aaPredicted RBP10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 IL37Q9NZH6 218 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ZNF624Q9P2J8 865 aaPredicted RBP10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 DHRS7Q9Y394 339 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SAMHD1Q9Y3Z3 626 aaKnown RBP10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TTC28Q96AY4 2481 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 hCG_2039718K7EN88 272 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SNX4O95219 450 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PRNPP04156 253 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ANXA4P09525 319 aaPredicted RBP10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 RAP2AP10114 183 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MCCD1P59942 119 aaPredicted RBP10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 OLR1P78380 273 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PUDPQ08623 228 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ELP6Q0PNE2 266 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 KCNAB2Q13303 367 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 INAVAQ3KP66 663 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 BHLHB9Q6PI77 547 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ANKRD33Q7Z3H0 272 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TICAM1Q8IUC6 712 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CPA6Q8N4T0 437 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 OR4K1Q8NGD4 311 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 FIBINQ8TAL6 211 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PPP3R2Q96LZ3 170 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ASB2Q96Q27 587 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 NECTIN3Q9NQS3 549 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 RDH8Q9NYR8 311 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SLC9A8Q9Y2E8 581 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MAP4K5Q9Y4K4 846 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PCDHGA7Q9Y5G6 932 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 LOC100130705A0A1B0GUX0 176 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 GSAPA4D1B5 854 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 LINC01553A4QN01 128 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 IGLON5A6NGN9 336 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MEN1O00255 615 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 VPS4BO75351 444 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 DNTTP04053 509 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 C7P10643 843 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 BMP4P12644 408 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CAPN3P20807 821 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PRKACGP22612 351 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TALDO1P37837 337 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 RACK1P63244 317 aaKnown RBP10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 NFE2L1Q14494 772 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TIGD6Q17RP2 521 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 VRK3Q8IV63 474 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 RGL4Q8IZJ4 473 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CELF5Q8N6W0 485 aaKnown RBP10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MFSD2AQ8NA29 543 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SPPL3Q8TCT6 385 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TTLL2Q9BWV7 592 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SLC7A5P2Q9GIP4 190 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 FBXL12Q9NXK8 326 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 QPCTLQ9NXS2 382 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CA5BQ9Y2D0 317 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 IGLV3-10A0A075B6K4 115 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TMEM202A6NGA9 273 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 RASGRP1O95267 797 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SBK3P0C264 359 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 LHCGRP22888 699 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ACRV1P26436 265 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MXD1Q05195 221 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SCRN3Q0VDG4 424 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SLC36A3Q495N2 470 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 NHSL2Q5HYW2 709 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 AADATQ8N5Z0 425 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 FRMD1Q8N878 549 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PIK3C3Q8NEB9 887 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 OR13F1Q8NGS4 319 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PIH1D2Q8WWB5 315 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CLP1Q92989 425 aaKnown RBP10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms