RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 RHCGQ9UBD6 479 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 ZNF639Q9UID6 485 aa15.91■□□□□ 0.14
COL7A1-210ENST00000487017 SH3D21A4FU49 640 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 ARVCFO00192 962 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 NFKBIEO00221 500 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 MATN1P21941 496 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 ATP5A1P25705 553 aaKnown RBP15.9■□□□□ 0.14
COL7A1-210ENST00000487017 ZNF548Q8NEK5 533 aaPredicted RBP15.9■□□□□ 0.14
COL7A1-210ENST00000487017 REEP4Q9H6H4 257 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 TLX3O43711 291 aaPredicted RBP15.9■□□□□ 0.14
COL7A1-210ENST00000487017 CDC40O60508 579 aaKnown RBP eCLIP15.9■□□□□ 0.14
COL7A1-210ENST00000487017 ZNF8P17098 575 aaPredicted RBP15.9■□□□□ 0.14
COL7A1-210ENST00000487017 HOXC12P31275 282 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 DSG2Q14126 1118 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 PTGR1Q14914 329 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 NOXRED1Q6NXP6 359 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 DLK2Q6UY11 383 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 ZFAND4Q86XD8 727 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 CMTM8Q8IZV2 173 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 OR52E4Q8NGH9 312 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 AUTS2Q8WXX7 1259 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 EXOSC1Q9Y3B2 195 aaKnown RBP15.9■□□□□ 0.14
COL7A1-210ENST00000487017 ZNF142P52746 1687 aaPredicted RBP15.9■□□□□ 0.14
COL7A1-210ENST00000487017 J3QLW9 94 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 PRH1P02810 166 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 ZNF19P17023 458 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 NFATC2Q13469 925 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 TMCO2Q7Z6W1 182 aaPredicted RBP15.9■□□□□ 0.14
COL7A1-210ENST00000487017 TCEANCQ8N8B7 351 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 OR9A1PQ8NGU1 263 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 TRIB3Q96RU7 358 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 ZNF69Q9UC07 566 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 CFAP20Q9Y6A4 193 aaKnown RBP15.9■□□□□ 0.14
COL7A1-210ENST00000487017 TEX46H3BTG2 121 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 BEST1O76090 585 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 GALNT12Q8IXK2 581 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 CAMKVQ8NCB2 501 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 BIRC8Q96P09 236 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 AURKAO14965 403 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 MAFKO60675 156 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 BMP8BP34820 402 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 KCNC4Q03721 635 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 LIPJQ5W064 366 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 BLOC1S3Q6QNY0 202 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 BMP8AQ7Z5Y6 402 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 ZDHHC14Q8IZN3 488 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 KRTCAP2Q8N6L1 136 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 ZNF527Q8NB42 609 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 PSKH2Q96QS6 385 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 CD180Q99467 661 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 DLGAP4Q9Y2H0 992 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 MEMO1Q9Y316 297 aa15.9■□□□□ 0.14
COL7A1-210ENST00000487017 TMEM150CB9EJG8 249 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 CCRL2O00421 344 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 CA12O43570 354 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 STOMP27105 288 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 MAP2K4P45985 399 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 SLC11A1P49279 550 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 PDX1P52945 283 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 SHQ1Q6PI26 577 aaKnown RBP15.89■□□□□ 0.13
COL7A1-210ENST00000487017 HSDL2Q6YN16 418 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 SIPA1Q96FS4 1042 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 ADAD1Q96M93 576 aaKnown RBP15.89■□□□□ 0.13
COL7A1-210ENST00000487017 NUP188Q5SRE5 1749 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 OR1E2P47887 323 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 ZNF252P-AS1Q0IIN9 211 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 GRIK2Q13002 908 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 ENPP2Q13822 863 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 UPP1Q16831 310 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 MEDAGQ5VYS4 303 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 ENPP7Q6UWV6 458 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 OVCA2Q8WZ82 227 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 WACQ9BTA9 647 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 PTGDR2Q9Y5Y4 395 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 EDDM13A0A1B0GTR0 161 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 GJA1P17302 382 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 CDKN2DP55273 166 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 OR12D2P58182 307 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 ARF3P61204 181 aaPredicted RBP15.89■□□□□ 0.13
COL7A1-210ENST00000487017 ARF1P84077 181 aaKnown RBP15.89■□□□□ 0.13
COL7A1-210ENST00000487017 PRAMEF17Q5VTA0 474 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 NCEH1Q6PIU2 408 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 RGS17Q9UGC6 210 aaPredicted RBP15.89■□□□□ 0.13
COL7A1-210ENST00000487017 PRELID1Q9Y255 219 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 KANTRA0A1W2PQU2 76 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 PDYNP01213 254 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 APOC1P02654 83 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 UQCRC2P22695 453 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 HLCSP50747 726 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 AP2S1P53680 142 aaPredicted RBP15.89■□□□□ 0.13
COL7A1-210ENST00000487017 ST3GAL4Q11206 333 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 SCAPQ12770 1279 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 PDGFRLQ15198 375 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 PIGGQ5H8A4 983 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 RTP4Q96DX8 246 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 HERPUD2Q9BSE4 406 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 MAU2Q9Y6X3 613 aa15.89■□□□□ 0.13
COL7A1-210ENST00000487017 RGPD8O14715 1765 aaPredicted RBP15.89■□□□□ 0.13
COL7A1-210ENST00000487017 SOCS2O14508 198 aa15.88■□□□□ 0.13
COL7A1-210ENST00000487017 SOCS5O75159 536 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms