RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 FAM95CA0A1B0GW59 222 aa20.27■□□□□ 0.84
USP40-215ENST00000484528 MAGEB17A8MXT2 336 aa20.27■□□□□ 0.84
USP40-215ENST00000484528 WISP2O76076 250 aa20.27■□□□□ 0.84
USP40-215ENST00000484528 CRYABP02511 175 aaKnown RBP20.27■□□□□ 0.84
USP40-215ENST00000484528 OR4D2P58180 307 aa20.27■□□□□ 0.84
USP40-215ENST00000484528 RAB8AP61006 207 aa20.27■□□□□ 0.84
USP40-215ENST00000484528 REEP5Q00765 189 aa20.27■□□□□ 0.84
USP40-215ENST00000484528 MGAT5Q09328 741 aa20.27■□□□□ 0.84
USP40-215ENST00000484528 TUBA3CQ13748 450 aa20.27■□□□□ 0.84
USP40-215ENST00000484528 USP10Q14694 798 aaKnown RBP20.27■□□□□ 0.84
USP40-215ENST00000484528 EXT1Q16394 746 aa20.27■□□□□ 0.84
USP40-215ENST00000484528 H3F3CQ6NXT2 135 aa20.27■□□□□ 0.84
USP40-215ENST00000484528 TUBA3EQ6PEY2 450 aa20.27■□□□□ 0.84
USP40-215ENST00000484528 CAPN12Q6ZSI9 719 aa20.27■□□□□ 0.84
USP40-215ENST00000484528 ZC3HC1Q86WB0 502 aaKnown RBP20.27■□□□□ 0.84
USP40-215ENST00000484528 ANKRD53Q8N9V6 530 aa20.27■□□□□ 0.84
USP40-215ENST00000484528 PLPP5Q8NEB5 264 aa20.27■□□□□ 0.84
USP40-215ENST00000484528 M1APQ8TC57 530 aa20.27■□□□□ 0.84
USP40-215ENST00000484528 TBC1D20Q96BZ9 403 aa20.27■□□□□ 0.84
USP40-215ENST00000484528 PDLIM5Q96HC4 596 aaKnown RBP20.27■□□□□ 0.84
USP40-215ENST00000484528 EGFL8Q99944 293 aa20.27■□□□□ 0.84
USP40-215ENST00000484528 UNKQ9C0B0 810 aaKnown RBP20.27■□□□□ 0.84
USP40-215ENST00000484528 MMP25Q9NPA2 562 aa20.27■□□□□ 0.84
USP40-215ENST00000484528 SEC14L3Q9UDX4 400 aa20.27■□□□□ 0.84
USP40-215ENST00000484528 ZFP69BQ9UJL9 534 aa20.27■□□□□ 0.84
USP40-215ENST00000484528 SLC22A14Q9Y267 594 aa20.27■□□□□ 0.84
USP40-215ENST00000484528 TRGV8A0A0C4DH27 118 aa20.26■□□□□ 0.83
USP40-215ENST00000484528 TP73O15350 636 aa20.26■□□□□ 0.83
USP40-215ENST00000484528 PIAS1O75925 651 aa20.26■□□□□ 0.83
USP40-215ENST00000484528 TAS2R39P59534 338 aa20.26■□□□□ 0.83
USP40-215ENST00000484528 MRPS25P82663 173 aaKnown RBP20.26■□□□□ 0.83
USP40-215ENST00000484528 MEP1AQ16819 746 aa20.26■□□□□ 0.83
USP40-215ENST00000484528 C18orf21Q32NC0 220 aaPredicted RBP20.26■□□□□ 0.83
USP40-215ENST00000484528 CYP4X1Q8N118 509 aa20.26■□□□□ 0.83
USP40-215ENST00000484528 NT5CQ8TCD5 201 aa20.26■□□□□ 0.83
USP40-215ENST00000484528 UTP15Q8TED0 518 aaKnown RBP20.26■□□□□ 0.83
USP40-215ENST00000484528 RUNDC3BQ96NL0 473 aa20.26■□□□□ 0.83
USP40-215ENST00000484528 RHBGQ9H310 441 aa20.26■□□□□ 0.83
USP40-215ENST00000484528 PELI2Q9HAT8 420 aa20.26■□□□□ 0.83
USP40-215ENST00000484528 EFCAB8A8MWE9 144 aa20.25■□□□□ 0.83
USP40-215ENST00000484528 C4orf51C9J302 202 aa20.25■□□□□ 0.83
USP40-215ENST00000484528 MYBL2P10244 700 aa20.25■□□□□ 0.83
USP40-215ENST00000484528 IL10P22301 178 aa20.25■□□□□ 0.83
USP40-215ENST00000484528 JAK1P23458 1154 aa20.25■□□□□ 0.83
USP40-215ENST00000484528 CD96P40200 585 aa20.25■□□□□ 0.83
USP40-215ENST00000484528 SLC26A5P58743 744 aa20.25■□□□□ 0.83
USP40-215ENST00000484528 SKP1P63208 163 aa20.25■□□□□ 0.83
USP40-215ENST00000484528 GTF3C1Q12789 2109 aa20.25■□□□□ 0.83
USP40-215ENST00000484528 RBBP5Q15291 538 aaKnown RBP20.25■□□□□ 0.83
USP40-215ENST00000484528 TSNQ15631 228 aaKnown RBP20.25■□□□□ 0.83
USP40-215ENST00000484528 NXPE4Q6UWF7 544 aa20.25■□□□□ 0.83
USP40-215ENST00000484528 ABHD13Q7L211 337 aa20.25■□□□□ 0.83
USP40-215ENST00000484528 KIF2BQ8N4N8 673 aa20.25■□□□□ 0.83
USP40-215ENST00000484528 MDS2Q8NDY4 140 aa20.25■□□□□ 0.83
USP40-215ENST00000484528 DNAJB8Q8NHS0 232 aa20.25■□□□□ 0.83
USP40-215ENST00000484528 ANKRD49Q8WVL7 239 aa20.25■□□□□ 0.83
USP40-215ENST00000484528 NAPGQ99747 312 aaPredicted RBP20.25■□□□□ 0.83
USP40-215ENST00000484528 AIF1LQ9BQI0 150 aa20.25■□□□□ 0.83
USP40-215ENST00000484528 UTP23Q9BRU9 249 aaKnown RBP20.25■□□□□ 0.83
USP40-215ENST00000484528 TSPAN10Q9H1Z9 355 aaPredicted RBP20.25■□□□□ 0.83
USP40-215ENST00000484528 KLHL31Q9H511 634 aa20.25■□□□□ 0.83
USP40-215ENST00000484528 SNX24Q9Y343 169 aa20.25■□□□□ 0.83
USP40-215ENST00000484528 SAR1BQ9Y6B6 198 aa20.25■□□□□ 0.83
USP40-215ENST00000484528 GABRR3A8MPY1 467 aa20.24■□□□□ 0.83
USP40-215ENST00000484528 AHRP35869 848 aa20.24■□□□□ 0.83
USP40-215ENST00000484528 RPL21P46778 160 aaKnown RBP20.24■□□□□ 0.83
USP40-215ENST00000484528 BTG2P78543 158 aa20.24■□□□□ 0.83
USP40-215ENST00000484528 OC90Q02509 493 aaPredicted RBP20.24■□□□□ 0.83
USP40-215ENST00000484528 HYAL2Q12891 473 aa20.24■□□□□ 0.83
USP40-215ENST00000484528 FRG1Q14331 258 aaKnown RBP20.24■□□□□ 0.83
USP40-215ENST00000484528 OR1C1Q15619 314 aa20.24■□□□□ 0.83
USP40-215ENST00000484528 TOR1AIP1Q5JTV8 583 aa20.24■□□□□ 0.83
USP40-215ENST00000484528 SPINK14Q6IE38 97 aa20.24■□□□□ 0.83
USP40-215ENST00000484528 CEP97Q8IW35 865 aa20.24■□□□□ 0.83
USP40-215ENST00000484528 ZBED8Q8IZ13 594 aa20.24■□□□□ 0.83
USP40-215ENST00000484528 NKAPQ8N5F7 415 aaKnown RBP20.24■□□□□ 0.83
USP40-215ENST00000484528 SLC5A8Q8N695 610 aa20.24■□□□□ 0.83
USP40-215ENST00000484528 RELTQ969Z4 430 aa20.24■□□□□ 0.83
USP40-215ENST00000484528 PTCHD1Q96NR3 888 aa20.24■□□□□ 0.83
USP40-215ENST00000484528 KRT12Q99456 494 aa20.24■□□□□ 0.83
USP40-215ENST00000484528 SLC6A16Q9GZN6 736 aa20.24■□□□□ 0.83
USP40-215ENST00000484528 MOCS1Q9NZB8 636 aa20.24■□□□□ 0.83
USP40-215ENST00000484528 ARHGAP10A1A4S6 786 aa20.23■□□□□ 0.83
USP40-215ENST00000484528 PRSS44E7EML9 344 aa20.23■□□□□ 0.83
USP40-215ENST00000484528 FAM227AF5H4B4 570 aa20.23■□□□□ 0.83
USP40-215ENST00000484528 MAOAP21397 527 aa20.23■□□□□ 0.83
USP40-215ENST00000484528 GDF5P43026 501 aa20.23■□□□□ 0.83
USP40-215ENST00000484528 TAS2R50P59544 299 aa20.23■□□□□ 0.83
USP40-215ENST00000484528 FRA10AC1Q70Z53 315 aa20.23■□□□□ 0.83
USP40-215ENST00000484528 VPS39Q96JC1 886 aa20.23■□□□□ 0.83
USP40-215ENST00000484528 AICDAQ9GZX7 198 aa20.23■□□□□ 0.83
USP40-215ENST00000484528 CDCP1Q9H5V8 836 aa20.23■□□□□ 0.83
USP40-215ENST00000484528 SMYD2Q9NRG4 433 aa20.23■□□□□ 0.83
USP40-215ENST00000484528 COPG2Q9UBF2 871 aa20.23■□□□□ 0.83
USP40-215ENST00000484528 CTNNAL1Q9UBT7 734 aa20.23■□□□□ 0.83
USP40-215ENST00000484528 OARD1Q9Y530 152 aa20.23■□□□□ 0.83
USP40-215ENST00000484528 KCNE2Q9Y6J6 123 aa20.23■□□□□ 0.83
USP40-215ENST00000484528 PKDREJQ9NTG1 2253 aa20.23■□□□□ 0.83
USP40-215ENST00000484528 A0A0G2JN53 185 aa20.22■□□□□ 0.83
USP40-215ENST00000484528 NCF1BA6NI72 391 aaPredicted RBP20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms