RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 MAZP56270 477 aaKnown RBP13.06□□□□□ -0.32
USP42-206ENST00000479544 SCAPQ12770 1279 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 SERINC3Q13530 473 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 Q6ZSR9 355 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 RNF130Q86XS8 419 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 LYSMD2Q8IV50 215 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 OR10H4Q8NGA5 316 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 AKAP1Q92667 903 aaKnown RBP eCLIP13.06□□□□□ -0.32
USP42-206ENST00000479544 KCNJ9Q92806 393 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 FYTTD1Q96QD9 318 aaKnown RBP13.06□□□□□ -0.32
USP42-206ENST00000479544 ZNF607Q96SK3 696 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 CD244Q9BZW8 370 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 DLGAP4Q9Y2H0 992 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 DOCK2Q92608 1830 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 BMP7P18075 431 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 GTF2H4Q92759 462 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 UFD1Q92890 307 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 DCAF13Q9NV06 445 aaKnown RBP13.06□□□□□ -0.32
USP42-206ENST00000479544 DDX60LQ5H9U9 1706 aaKnown RBP13.06□□□□□ -0.32
USP42-206ENST00000479544 DDX60Q8IY21 1712 aaKnown RBP13.06□□□□□ -0.32
USP42-206ENST00000479544 RP1L1Q8IWN7 2480 aaPredicted RBP13.06□□□□□ -0.32
USP42-206ENST00000479544 SLX4Q8IY92 1834 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 C2orf92A0A1B0GVN3 265 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 A0A1W2PRB8 838 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 SMLR1H3BR10 107 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 WWP2O00308 870 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 DNAJB5O75953 348 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 TACR1P25103 407 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 MAP2K3P46734 347 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 ZNF691Q5VV52 312 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 ATG9BQ674R7 924 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 PRSS55Q6UWB4 352 aaPredicted RBP13.05□□□□□ -0.32
USP42-206ENST00000479544 PAQR9Q6ZVX9 377 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 VASH1Q7L8A9 365 aaPredicted RBP13.05□□□□□ -0.32
USP42-206ENST00000479544 CDK20Q8IZL9 346 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 KCNH6Q9H252 994 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 MRM3Q9HC36 420 aaKnown RBP13.05□□□□□ -0.32
USP42-206ENST00000479544 KIF13BQ9NQT8 1826 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 CLCA1A8K7I4 914 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 PTGESO14684 152 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 LAMP1P11279 417 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 KCNE1P15382 129 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 HOXD11P31277 338 aaPredicted RBP13.05□□□□□ -0.32
USP42-206ENST00000479544 ASMTP46597 345 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 DEFA5Q01523 94 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 NDUFAF6Q330K2 333 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 PYCR3Q53H96 274 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 CFAP206Q8IYR0 622 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 IQCF1Q8N6M8 205 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 C9orf43Q8TAL5 461 aaPredicted RBP13.05□□□□□ -0.32
USP42-206ENST00000479544 APIPQ96GX9 242 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 CRELD1Q96HD1 420 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 SLCO3A1Q9UIG8 710 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 HCN4Q9Y3Q4 1203 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 DLGAP1O14490 977 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 KLK1P06870 262 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 NUDT7P0C024 238 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 IFNGR2P38484 337 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 SNRPD1P62314 119 aaKnown RBP13.05□□□□□ -0.32
USP42-206ENST00000479544 VLDLRP98155 873 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 NOXA1Q86UR1 476 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 BEND7Q8N7W2 519 aaPredicted RBP13.05□□□□□ -0.32
USP42-206ENST00000479544 GALNT6Q8NCL4 622 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 DNASE1L2Q92874 299 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 REPS1Q96D71 796 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 IL20RAQ9UHF4 553 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 USP3Q9Y6I4 520 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 CHRNB1P11230 501 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 GRSF1Q12849 480 aaKnown RBP eCLIP13.05□□□□□ -0.32
USP42-206ENST00000479544 CARD16Q5EG05 197 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 COQ5Q5HYK3 327 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 C9orf64Q5T6V5 341 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 PM20D1Q6GTS8 502 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 KDELC1Q6UW63 502 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 ADGRD2Q7Z7M1 963 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 RAB42Q8N4Z0 105 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 GATAD2BQ8WXI9 593 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 PLSCR3Q9NRY6 295 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 CDH7Q9ULB5 785 aa13.05□□□□□ -0.32
USP42-206ENST00000479544 RP1P56715 2156 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 A0A1B0GVM2 712 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 A0A1W2PRG6 482 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 H7C4K7 107 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 PROX2Q3B8N5 592 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 MTFR2Q6P444 385 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 SHQ1Q6PI26 577 aaKnown RBP13.04□□□□□ -0.32
USP42-206ENST00000479544 CEACAM20Q6UY09 585 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 RD3Q7Z3Z2 195 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 TTC9BQ8N6N2 239 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 C12orf66Q96MD2 445 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 TSSK6Q9BXA6 273 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 PGAP2Q9UHJ9 254 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 HCN2Q9UL51 889 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 NCKAP1Q9Y2A7 1128 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 YARS2Q9Y2Z4 477 aaKnown RBP13.04□□□□□ -0.32
USP42-206ENST00000479544 DHRS7Q9Y394 339 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 FAM25EA8MYX2 175 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 MAN2A2P49641 1150 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 LRRC26Q2I0M4 334 aa13.04□□□□□ -0.32
USP42-206ENST00000479544 RNF44Q7L0R7 432 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms