RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 TMEM156Q8N614 296 aa16.05■□□□□ 0.16
VIM-204ENST00000478746 LRRC57Q8N9N7 239 aa16.05■□□□□ 0.16
VIM-204ENST00000478746 TC2NQ8N9U0 490 aa16.05■□□□□ 0.16
VIM-204ENST00000478746 RMND5BQ96G75 393 aaPredicted RBP16.05■□□□□ 0.16
VIM-204ENST00000478746 PTCHD1Q96NR3 888 aa16.05■□□□□ 0.16
VIM-204ENST00000478746 FAM129AQ9BZQ8 928 aa16.05■□□□□ 0.16
VIM-204ENST00000478746 IL22Q9GZX6 179 aa16.05■□□□□ 0.16
VIM-204ENST00000478746 BFARQ9NZS9 450 aa16.05■□□□□ 0.16
VIM-204ENST00000478746 ZNF148Q9UQR1 794 aa16.05■□□□□ 0.16
VIM-204ENST00000478746 PLEKHA6Q9Y2H5 1048 aa16.05■□□□□ 0.16
VIM-204ENST00000478746 SAGE2PA6NJ88 616 aa16.04■□□□□ 0.16
VIM-204ENST00000478746 GFYI3L273 518 aa16.04■□□□□ 0.16
VIM-204ENST00000478746 CHST10O43529 356 aa16.04■□□□□ 0.16
VIM-204ENST00000478746 ARNTP27540 789 aa16.04■□□□□ 0.16
VIM-204ENST00000478746 IMPA1P29218 277 aa16.04■□□□□ 0.16
VIM-204ENST00000478746 COILP38432 576 aaPredicted RBP16.04■□□□□ 0.16
VIM-204ENST00000478746 ZFP36L2P47974 494 aaKnown RBP16.04■□□□□ 0.16
VIM-204ENST00000478746 NR0B1P51843 470 aaKnown RBP16.04■□□□□ 0.16
VIM-204ENST00000478746 DGKQP52824 942 aa16.04■□□□□ 0.16
VIM-204ENST00000478746 MEF2AQ02078 507 aaPredicted RBP16.04■□□□□ 0.16
VIM-204ENST00000478746 HERC3Q15034 1050 aa16.04■□□□□ 0.16
VIM-204ENST00000478746 RPS6KA1Q15418 735 aa16.04■□□□□ 0.16
VIM-204ENST00000478746 OASLQ15646 514 aaKnown RBP16.04■□□□□ 0.16
VIM-204ENST00000478746 TTLL9Q3SXZ7 439 aa16.04■□□□□ 0.16
VIM-204ENST00000478746 CES3Q6UWW8 571 aa16.04■□□□□ 0.16
VIM-204ENST00000478746 PEX26Q7Z412 305 aa16.04■□□□□ 0.16
VIM-204ENST00000478746 MDGA2Q7Z553 956 aa16.04■□□□□ 0.16
VIM-204ENST00000478746 ARMC10Q8N2F6 343 aa16.04■□□□□ 0.16
VIM-204ENST00000478746 PRELID2Q8N945 189 aa16.04■□□□□ 0.16
VIM-204ENST00000478746 MFSD3Q96ES6 412 aa16.04■□□□□ 0.16
VIM-204ENST00000478746 ALPK1Q96QP1 1244 aa16.04■□□□□ 0.16
VIM-204ENST00000478746 GPATCH1Q9BRR8 931 aaKnown RBP16.04■□□□□ 0.16
VIM-204ENST00000478746 CLEC4MQ9H2X3 399 aaPredicted RBP16.04■□□□□ 0.16
VIM-204ENST00000478746 CCDC177Q9NQR7 707 aaPredicted RBP16.04■□□□□ 0.16
VIM-204ENST00000478746 PNPLA3Q9NST1 481 aa16.04■□□□□ 0.16
VIM-204ENST00000478746 PACSIN2Q9UNF0 486 aaPredicted RBP16.04■□□□□ 0.16
VIM-204ENST00000478746 DRG1Q9Y295 367 aaKnown RBP16.04■□□□□ 0.16
VIM-204ENST00000478746 GRID2IPA4D2P6 1211 aa16.03■□□□□ 0.16
VIM-204ENST00000478746 BTNL10A8MVZ5 291 aa16.03■□□□□ 0.16
VIM-204ENST00000478746 LIASO43766 372 aa16.03■□□□□ 0.16
VIM-204ENST00000478746 DNAJB6O75190 326 aa16.03■□□□□ 0.16
VIM-204ENST00000478746 SLC35G6P0C7Q6 338 aa16.03■□□□□ 0.16
VIM-204ENST00000478746 MPC1LP0DKB6 136 aa16.03■□□□□ 0.16
VIM-204ENST00000478746 ACVR2AP27037 513 aa16.03■□□□□ 0.16
VIM-204ENST00000478746 GRK3P35626 688 aa16.03■□□□□ 0.16
VIM-204ENST00000478746 SKIV2L2P42285 1042 aaKnown RBP16.03■□□□□ 0.16
VIM-204ENST00000478746 CLCN7P51798 805 aa16.03■□□□□ 0.16
VIM-204ENST00000478746 PPIAP62937 165 aaKnown RBP16.03■□□□□ 0.16
VIM-204ENST00000478746 BIVMQ86UB2 503 aa16.03■□□□□ 0.16
VIM-204ENST00000478746 NFAM1Q8NET5 270 aaPredicted RBP16.03■□□□□ 0.16
VIM-204ENST00000478746 OR5M9Q8NGP3 310 aa16.03■□□□□ 0.16
VIM-204ENST00000478746 GOT1L1Q8NHS2 421 aaPredicted RBP16.03■□□□□ 0.16
VIM-204ENST00000478746 PWWP2AQ96N64 755 aa16.03■□□□□ 0.16
VIM-204ENST00000478746 SLC30A3Q99726 388 aa16.03■□□□□ 0.16
VIM-204ENST00000478746 TTYH2Q9BSA4 534 aa16.03■□□□□ 0.16
VIM-204ENST00000478746 PCBD2Q9H0N5 130 aa16.03■□□□□ 0.16
VIM-204ENST00000478746 TIMMDC1Q9NPL8 285 aa16.03■□□□□ 0.16
VIM-204ENST00000478746 RASSF1Q9NS23 344 aa16.03■□□□□ 0.16
VIM-204ENST00000478746 PAK5Q9P286 719 aa16.03■□□□□ 0.16
VIM-204ENST00000478746 EPN1Q9Y6I3 576 aaPredicted RBP16.03■□□□□ 0.16
VIM-204ENST00000478746 A8MUA0 341 aa16.02■□□□□ 0.16
VIM-204ENST00000478746 MIF4GDA9UHW6 222 aaKnown RBP16.02■□□□□ 0.16
VIM-204ENST00000478746 AP3B1O00203 1094 aa16.02■□□□□ 0.16
VIM-204ENST00000478746 GALR3O60755 368 aaPredicted RBP16.02■□□□□ 0.16
VIM-204ENST00000478746 KIR2DL3P43628 341 aa16.02■□□□□ 0.16
VIM-204ENST00000478746 SKP1P63208 163 aa16.02■□□□□ 0.16
VIM-204ENST00000478746 BTG2P78543 158 aa16.02■□□□□ 0.16
VIM-204ENST00000478746 PLGLB1Q02325 96 aa16.02■□□□□ 0.16
VIM-204ENST00000478746 CUL1Q13616 776 aa16.02■□□□□ 0.16
VIM-204ENST00000478746 ZNF585AQ6P3V2 769 aa16.02■□□□□ 0.16
VIM-204ENST00000478746 CYHR1Q6ZMK1 362 aa16.02■□□□□ 0.16
VIM-204ENST00000478746 UBE2R2Q712K3 238 aaPredicted RBP16.02■□□□□ 0.16
VIM-204ENST00000478746 Q71RC1 249 aaPredicted RBP16.02■□□□□ 0.16
VIM-204ENST00000478746 C17orf64Q86WR6 236 aa16.02■□□□□ 0.16
VIM-204ENST00000478746 AFAP1L2Q8N4X5 818 aa16.02■□□□□ 0.16
VIM-204ENST00000478746 CCDC89Q8N998 374 aa16.02■□□□□ 0.16
VIM-204ENST00000478746 MFSD9Q8NBP5 474 aa16.02■□□□□ 0.16
VIM-204ENST00000478746 CREB3L4Q8TEY5 395 aa16.02■□□□□ 0.16
VIM-204ENST00000478746 KIFC1Q9BW19 673 aa16.02■□□□□ 0.16
VIM-204ENST00000478746 FBXW2Q9UKT8 454 aa16.02■□□□□ 0.16
VIM-204ENST00000478746 ITGA10O75578 1167 aa16.01■□□□□ 0.15
VIM-204ENST00000478746 TUBB4AP04350 444 aa16.01■□□□□ 0.15
VIM-204ENST00000478746 GLI4P10075 376 aa16.01■□□□□ 0.15
VIM-204ENST00000478746 OGNP20774 298 aaKnown RBP16.01■□□□□ 0.15
VIM-204ENST00000478746 CLCN2P51788 898 aa16.01■□□□□ 0.15
VIM-204ENST00000478746 TBPL1P62380 186 aa16.01■□□□□ 0.15
VIM-204ENST00000478746 OLR1P78380 273 aa16.01■□□□□ 0.15
VIM-204ENST00000478746 SNTB1Q13884 538 aaKnown RBP16.01■□□□□ 0.15
VIM-204ENST00000478746 DEFB134Q4QY38 66 aa16.01■□□□□ 0.15
VIM-204ENST00000478746 B3GNT6Q6ZMB0 384 aa16.01■□□□□ 0.15
VIM-204ENST00000478746 QSOX2Q6ZRP7 698 aa16.01■□□□□ 0.15
VIM-204ENST00000478746 KIAA0408Q6ZU52 694 aa16.01■□□□□ 0.15
VIM-204ENST00000478746 CENPUQ71F23 418 aa16.01■□□□□ 0.15
VIM-204ENST00000478746 TAOK1Q7L7X3 1001 aa16.01■□□□□ 0.15
VIM-204ENST00000478746 CAMKMTQ7Z624 323 aa16.01■□□□□ 0.15
VIM-204ENST00000478746 LIX1LQ8IVB5 337 aa16.01■□□□□ 0.15
VIM-204ENST00000478746 RNF214Q8ND24 703 aa16.01■□□□□ 0.15
VIM-204ENST00000478746 ZNF740Q8NDX6 193 aa16.01■□□□□ 0.15
VIM-204ENST00000478746 MBD6Q96DN6 1003 aa16.01■□□□□ 0.15
VIM-204ENST00000478746 FRMD8P1Q9BZ68 369 aaPredicted RBP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms